Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00156 ATGAGAAATCAGATTGAGCATTGTTGGTTGCTGAATCTTATTATTTTAGACTTCAAAGTGATTTATGGATGTCATTTCCTGCATTATGTTCCTGGTGGCTTCAAAGCAGTCTCTCAGCTGATCAATGTTGGGAGCGATCCTGCTATTCCTCATGTTGGTAGAAATCCTATTCCACCATCCTTCCCTGATGGGTCTTCTCCTCCAGTTGTTAAAACCCGATTGTGCAACAAGTTTAATACGGCTGAGGGTTGCAAATTTGGTGACAAGTGTCACTTTGCCCATGGTGAGTGGGAGCTTGGCAGGCCTACGGCCCCATCATATGAAGATCCCCGTGTTATGGGACAAATGCCAAGCAGCAGAATAGGTGGACGTCTGGAGCCCCCACTTCCAGCTCATGGTGCAGCTGCCAGCTTTGGAGCCTCGGCCACTGCAAAAATCAGTATCAATGCCGCACTAGCTGGAGCAGTGATTGGAAAAGGAGGCGTCAACTCAAAGCAAATTTGTCGCGTAACAGGAGCTAAACTTGCCGTAAGGGATCACGACACGGATTCTAACCTCAGAAACATCGAGCTTGAAGGCAGTCTTGATCAGATCAAGCAAGCCAGTGCCATGGTACACGAACTTATTTTAAATCTTAGTAATGCCTCTGGGCCTCCAATGAAGACCTTTACTACACAGACTTCTGCCCCGGCAAGCAACTTCAAGACCAAGCTCTGCGAAAACTTTGCTAAAGGTTCCTGCACTTTTGGGGAAAGGTGTCACTTCGCTCATGGAACTGATGATTTGCGCAAGACTGGAATATGA 804 0.4701 MRNQIEHCWLLNLIILDFKVIYGCHFLHYVPGGFKAVSQLINVGSDPAIPHVGRNPIPPSFPDGSSPPVVKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTAPSYEDPRVMGQMPSSRIGGRLEPPLPAHGAAASFGASATAKISINAALAGAVIGKGGVNSKQICRVTGAKLAVRDHDTDSNLRNIELEGSLDQIKQASAMVHELILNLSNASGPPMKTFTTQTSAPASNFKTKLCENFAKGSCTFGERCHFAHGTDDLRKTGI 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00156 267 Gene3D - 230 265 - -
Vimu2g00156 267 Gene3D - 64 101 - -
Vimu2g00156 267 ProSiteProfiles Zinc finger C3H1-type profile. 233 260 IPR000571 GO:0046872
Vimu2g00156 267 SMART c3hfinal6 71 96 IPR000571 GO:0046872
Vimu2g00156 267 SMART c3hfinal6 233 259 IPR000571 GO:0046872
Vimu2g00156 267 PANTHER CCCH ZINC FINGER/TIS11-RELATED 221 264 IPR045877 GO:0003729
Vimu2g00156 267 Gene3D K Homology domain, type 1 137 229 IPR036612 GO:0003723
Vimu2g00156 267 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 132 211 IPR036612 GO:0003723
Vimu2g00156 267 SUPERFAMILY CCCH zinc finger 67 100 IPR036855 GO:0046872
Vimu2g00156 267 FunFam Zinc finger CCCH domain-containing protein 228 264 - -
Vimu2g00156 267 ProSiteProfiles Type-1 KH domain profile. 141 205 - -
Vimu2g00156 267 FunFam Zinc finger CCCH domain-containing protein 64 101 - -
Vimu2g00156 267 ProSiteProfiles Zinc finger C3H1-type profile. 70 97 IPR000571 GO:0046872
Vimu2g00156 267 SUPERFAMILY CCCH zinc finger 232 263 IPR036855 GO:0046872
Vimu2g00156 267 SMART kh_6 140 210 IPR004087 GO:0003676
Vimu2g00156 267 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 71 96 IPR000571 GO:0046872
Vimu2g00156 267 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 234 258 IPR000571 GO:0046872
Vimu2g00156 267 Pfam KH domain 144 206 IPR004088 GO:0003723
Vimu2g00156 267 CDD KH-I_AtC3H36_like 145 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00156 Vimu-Chr2 919865 921286 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu2g00156 KH_1 1.9e-10 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00156 - - gmx:100792652 463.381