Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00153 ATGACGAACAGAAGCAGGGATTGTTATTCAGATTGCAGCGAAATCAATTTTGCAGCATTTGGCGCCATGCAAGAAGAGAATAACGCAGCAGGGCCGTTGCTTCAGAAGTTCAAAGGCGTTGTGCCGCAACAAAACGGAAACTGGGGTGCACAGATATATGCAAACCACCAGAGAATCTGGCTGGGGACTTTCAAATCCGAAAGAGAGGCTGCAATGGCTTATGACAGCGCCAGCATAAAACTCAGAAGCGGAGACAGCCACAGAAACTTTCCATGGAACGATCAAACGGTGCAAGAGCCTCAGTTTCAAAGCCATTACAGCACAGAAACAATGCTGAGCATGATTAGAGATGGCACCTACCCATCACGCTTTGCTACATTTCTCAGCACTCGTCAAACCCAACAAGGTGGTGTTCCCAAGCACGTAACTTTGAAGGGTGATTGCAAGGAGCAGCTTTGCTGCACCCAGCTTTTTCAAAAGGAGTTGACACCGAGTGATGTGGGGAAGCTCAACAGGCTTGTCATCCCGAAAAAGCATGCAGTCACATATTTTCCTAACGTGTCTGACGGCGGTGCAGAATCGCATGAAGAAAACGTGAGTGCTGACGTTGAGGTTGCGTTTTACGACAGGCTGATGAGACTGTGGAAATTTCGATACTGTTATTGGAAGAGCAGCCAAAGTTACGTGTTCACAAGAGGGTGGAATCGGTTCGTGAAGGACAAAAAGCTGAAGGCTAAAGATACCATTGCGTTTTTCATGTGCGAACCTGTGGATTGCAGAAAAGGAGGAGAGGGAGAAGCTTTTGGATTGATTGATGTAATCTATAATTCAGATGATGATGATGATGAAGACACCAAAGATGAAAACACTGTAAAGGATTTGAATGCAGAAAAGGGTTTGAAACTCTTTGGAGTTTTGATCAAATAG 927 0.4542 MTNRSRDCYSDCSEINFAAFGAMQEENNAAGPLLQKFKGVVPQQNGNWGAQIYANHQRIWLGTFKSEREAAMAYDSASIKLRSGDSHRNFPWNDQTVQEPQFQSHYSTETMLSMIRDGTYPSRFATFLSTRQTQQGGVPKHVTLKGDCKEQLCCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPNVSDGGAESHEENVSADVEVAFYDRLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIAFFMCEPVDCRKGGEGEAFGLIDVIYNSDDDDDEDTKDENTVKDLNAEKGLKLFGVLIK 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00153 308 Pfam B3 DNA binding domain 158 252 IPR003340 GO:0003677
Vimu2g00153 308 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Vimu2g00153 308 CDD B3_DNA 157 253 IPR003340 GO:0003677
Vimu2g00153 308 Gene3D - 154 266 IPR015300 -
Vimu2g00153 308 Gene3D AP2/ERF domain 35 92 IPR036955 GO:0003700|GO:0006355
Vimu2g00153 308 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 35 305 IPR044800 GO:0003700
Vimu2g00153 308 SMART B3_2 158 262 IPR003340 GO:0003677
Vimu2g00153 308 ProSiteProfiles AP2/ERF domain profile. 36 91 IPR001471 GO:0003700|GO:0006355
Vimu2g00153 308 FunFam AP2 domain-containing protein RAP2.8 35 92 - -
Vimu2g00153 308 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Vimu2g00153 308 Pfam AP2 domain 36 82 IPR001471 GO:0003700|GO:0006355
Vimu2g00153 308 SUPERFAMILY DNA-binding pseudobarrel domain 156 255 IPR015300 -
Vimu2g00153 308 ProSiteProfiles B3 DNA-binding domain profile. 158 277 IPR003340 GO:0003677
Vimu2g00153 308 SMART rav1_2 36 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00153 Vimu-Chr2 910429 911355 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00153 36 308 RAV Transcription Factor Family AT1G50680 53.722 1.21e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu2g00153 B3 3.4e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00153 K09287 - gmx:102660503 430.639