Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00145 ATGACTGCTACCAATGTTCTTATTTGTGTGGTCACTATTATCCTTCTTCCTCTGTTGCAACTCTCACTCGTCTCTGCTTCTGCTAAGACTAATGTTAGCATTGGTGATACCCTTATTGCAGGTAATGAGGGTGCTCAATGGCTCTCTCCATCAGGAGAGTTTGCGTTTGGATTTCATCAGCCTGAGAGTTATTCCCTTTTCTTGGTTGCCATAAGATATCAAAACATACCTCGTGCCTCTTTCATTTGGTATGCAAATGGAGACAACCCTGCTCCTAAAGGCTCCACACTAGAGCTCAGTAAAAGCAGAGGGCTTGTGCTGAAAAACCCTCAGGGTGTTGAGCTATGGACATCGCAGCTCATATCAGGTACAATTTCCCATGGACTAATGAATGACACAGGCAACTTCCAGCTTCTTGGTGAGAATTCACAGATTTTGTGGGACAGTTTCAGCAATCCAACCGATACCTTGGTGCCAACTCAAATCATGGAGGTTAAAGGCACGCTTTCATCGCGCCAGAAAGAGACCAACTACACACGAGGAAGGTTCCAATTTCGCTTGCTTCCGGATGGTAATGCTGTGCTTAATCCTATAAATTTGCCTACCAACCGTACTTATGAGGCTCACTACATCAGCAACACTTATGATTCCAACAATAGAACCAACTCCGGTTTCCGAGTGATGTTTGATGATTCAGGATTTTATGTACTGAAGAGGAGCTATGAGAGGGTTTATATTACCAATCCAAATGATATGCTCTCAACTGATTCCTATTACTATAGAGCAACCATAAATTTTGATGGAACTTTCACCATATCCCGTTACCCGAAAAGTGGAGCTTCAAATCCAAGCTGGACAGTTATAAAGACATTGCCAGAAGACATTTGCATGAATTTGGAATTAAAAACGGCTGGTAGTGGGGTCTGTGGATTCAATAGTATCTGCACTCTGGAAGCTGATCAAAGACCTAAGTGCACATGCCCAGAAGGCTATTCTCTTCTTGATTCAAGTGATGAGTACGGCAGCTGCAGACCAAATTTGGAACTCGGTTGTGGAGGAATTGGACAAAGCTTGCAAGAAGATATGTACTTCATGAAGGAAATGACAAATACTGATTGGCCTCAATCAGATTTTGAGTTGTATGAACCTTACAACTCAGAGGACTGCAAGAATTCTTGCTTGCGAGATTGCTTATGTGCTGTTTCTATTTTTAGAGATGATAGCTGCTGGAAGAAGAAACTGCCTCTCTCAAATGGAAGACGGGGTGGAAAAGTTGAGGCATCTGCTTTCATTAAGTTGAGGAAAAATGATGCCTTGTCAGATAGTCCTTCAAATTCATTCATAAAAGAGAAGGAAAATGAAAAGTTAACTGTGATATCAGTCCTTCTTGGGGGTTCTGTCTTTTTGAATCTCATAGTGATCAGTGCAGTATGTATTGGTTTCCCCTTATACTACAAGAAGAGAAGTTCTACAAATAATACTGTTGCAGAGAGCAATTTGCGCAGTTTCAGCTTTAGAGAGCTTGTGCAAGCAACAGATAACTTCAGAGAAGAATTGGGAAGGGGATCTTGTGGCATTGTCTTTAAAGGAAAAACAGATTTGGCCACTATTGCTGTCAAAAAACTGGACAAGTTGCTCAAAGACAGCGATAAGGAATTCAAAACAGAGGTGAATGTAATTGGCCAAACTCATCACAAAAACTTGGTTCGTCTGATTGGATATTGTGATGAGCTGGAACACCGGATTCTGGTGTATGAGTTCATGAGCAATGGCACTTTGGCAAATTTCCTTTTCGAAGATTTCAAACCTAGCTGGAACCAAAGAGTCCAGATTGCCTTTGGGATATCAAGAGGGCTGGTTTACTTGCACGAGGAATGCTTCACCCAGATCATCCATTGTGACATAAAGCCTCAAAATATACTTCTTGATGAGCATTACAACGCAAGAATATCAGATTTTGGATTGTCAAAGCTACTAATGATTAATCAGAGCCGCACAGAAACTGGCATTCGAGGAACAAAAGGGTATGTTGCACCAGACTGGTTCAGGAGTGCGCCGATCACGACCAAGGTTGATGTCTACAGTTTTGGTGTAATGCTTCTGGAGATCATTTGCTGCAGGAGAAATGTAGATGATAAGTTTGAGATGGATGAGAAGGGCATTTTAACTGACTGGGCTTATGACTGCTATAGGGATGGAAGAATAGACATTCTGGTTGCAAATGACGATGAGGCTATCAATGACATAAATACGTTGGAAAGGTTTGTGATGATAGCTATTTGGTGCCTTCAAGAGGATCCCTCTCTCAGGCCAACAATGAAGAAGGTGATGCTGATGCTCGAAGGAATAGCTCCAGTCACAATTCCACCAAGTCCCTGCCCTTATGCCTCTGTTACTGTTAGTTCCGGTTGA 2412 0.4208 MTATNVLICVVTIILLPLLQLSLVSASAKTNVSIGDTLIAGNEGAQWLSPSGEFAFGFHQPESYSLFLVAIRYQNIPRASFIWYANGDNPAPKGSTLELSKSRGLVLKNPQGVELWTSQLISGTISHGLMNDTGNFQLLGENSQILWDSFSNPTDTLVPTQIMEVKGTLSSRQKETNYTRGRFQFRLLPDGNAVLNPINLPTNRTYEAHYISNTYDSNNRTNSGFRVMFDDSGFYVLKRSYERVYITNPNDMLSTDSYYYRATINFDGTFTISRYPKSGASNPSWTVIKTLPEDICMNLELKTAGSGVCGFNSICTLEADQRPKCTCPEGYSLLDSSDEYGSCRPNLELGCGGIGQSLQEDMYFMKEMTNTDWPQSDFELYEPYNSEDCKNSCLRDCLCAVSIFRDDSCWKKKLPLSNGRRGGKVEASAFIKLRKNDALSDSPSNSFIKEKENEKLTVISVLLGGSVFLNLIVISAVCIGFPLYYKKRSSTNNTVAESNLRSFSFRELVQATDNFREELGRGSCGIVFKGKTDLATIAVKKLDKLLKDSDKEFKTEVNVIGQTHHKNLVRLIGYCDELEHRILVYEFMSNGTLANFLFEDFKPSWNQRVQIAFGISRGLVYLHEECFTQIIHCDIKPQNILLDEHYNARISDFGLSKLLMINQSRTETGIRGTKGYVAPDWFRSAPITTKVDVYSFGVMLLEIICCRRNVDDKFEMDEKGILTDWAYDCYRDGRIDILVANDDEAINDINTLERFVMIAIWCLQEDPSLRPTMKKVMLMLEGIAPVTIPPSPCPYASVTVSSG 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00145 803 Pfam D-mannose binding lectin 81 166 IPR001480 -
Vimu2g00145 803 Gene3D - 28 152 IPR036426 -
Vimu2g00145 803 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 196 IPR036426 -
Vimu2g00145 803 CDD STKc_IRAK 519 783 - -
Vimu2g00145 803 ProSiteProfiles Protein kinase domain profile. 513 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00145 803 Gene3D Transferase(Phosphotransferase) domain 1 588 787 - -
Vimu2g00145 803 SUPERFAMILY Protein kinase-like (PK-like) 491 781 IPR011009 -
Vimu2g00145 803 ProSiteProfiles Bulb-type lectin domain profile. 23 151 IPR001480 -
Vimu2g00145 803 SMART serkin_6 513 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00145 803 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 38 793 - -
Vimu2g00145 803 Pfam Protein kinase domain 516 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00145 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Vimu2g00145 803 Gene3D Phosphorylase Kinase; domain 1 480 587 - -
Vimu2g00145 803 FunFam Serine/threonine-protein kinase 154 299 - -
Vimu2g00145 803 Gene3D - 153 279 IPR036426 -
Vimu2g00145 803 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 588 787 - -
Vimu2g00145 803 PIRSF SRK 1 802 IPR024171 GO:0004674
Vimu2g00145 803 FunFam S-receptor-like serine/threonine-protein kinase 484 587 - -
Vimu2g00145 803 SMART blect_4 37 153 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00145 Vimu-Chr2 879501 881912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00145 448 784 Receptor kinase-like Gene Family AT5G45780 37.249 1.27e-68 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu2g00145 Pkinase 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00145 - - vra:106771503 1569.67