Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00143 ATGAACTTCCGGGAGCCTAACCCCCCTCAACAAGGTTCAGAGAACCTGTTATGCAACTCAATTTTAGACTCACTTAAAGTAAGTAGCCAGACAATTTCTCGAGGTGTTATTCAACTTGGTTCCTTTGACAAGTTGCCAACTTCACTTGACAAAAGCATATTAACGAACCAAACAGAGCAGCAAAGCTTGCAATTCCAAAAGGTTCAAACATCAACTTTGGTTACTGTTGATACAGAACACCAGGAAGAGTTTGCCATGGCTGATGCCAGTCCTAGAACTGATATTTCTACAGATGCTGACACCGATGATAAGAATCCACAGTTTGATAGAAGTCAGGCCCTTGCTGCTGTGGCTTCTGACTCCAGTGACAGATCAAAAGATAAAACAGATCAGAAGACTCTCCGCAGGCTTGCTCAGAATCGTGAGGCTGCAAGAAAAAGCCGACTGAGAAAGAAAGCTTATGTTCAACAGCTGGAAAGTAGTCGTTTAAAGCTGACCCAACTGGAGCAAGAGCTTCAGCGAGCTAGGCAGCAGGGAGTCTTTATATCGAGTTCAGGTGATCAAGCGCATTCAATGAGTGGAAATGGGGCCATGGCATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATAAATGAGCTAAGAGCAGCTGTAAATTCTCACGCAGGTGATACAGAACTCTGCATGATTATCGATGGTGTAATGGCACATTATGATGAGATATTTAGACTGAAGGCCAATGCAGCTAAGGCTGATGTCTTCCATTTGTTGTCTGGCATGTGGAAAACACCAGCCGAGAGGTGTTTCCTATGGCTTGGAGGTTTTCGGTCTTCTGAACTCCTAAAGCTGCTGGTAAATCAGTTGGAACCTCTGACAGAGCAGCAGTTAGTGGGTATCACAAACTTGCAGCAATCTTCCCAACAGGCTGAAGATGCATTGTCTCAGGGTATGGAAGCATTGCAGCAGTCCCTTTCGGAGACATTATCCACTGGATCACTTGGCTCCTCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGCAAATTAGGGACACTTGAGGGGTTCATTAAGCAGGCTGATAATCTGCGCCAGCAAACACTGCAACAAATTCATCGGATACTGACAACTCGGCAATCTGCTCGTGCACTGCTAGCAATACATGACTACTTTTCTAGGCTGCGTGCTCTTAGCTCTCTTTGGCTTGCTCGCCCAAGAGATTGA 1254 0.4553 MNFREPNPPQQGSENLLCNSILDSLKVSSQTISRGVIQLGSFDKLPTSLDKSILTNQTEQQSLQFQKVQTSTLVTVDTEHQEEFAMADASPRTDISTDADTDDKNPQFDRSQALAAVASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGDQAHSMSGNGAMAFDAEYARWLEEQNRQINELRAAVNSHAGDTELCMIIDGVMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLSETLSTGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIKQADNLRQQTLQQIHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00143 417 Pfam bZIP transcription factor 132 172 IPR004827 GO:0003700|GO:0006355
Vimu2g00143 417 SUPERFAMILY Leucine zipper domain 132 175 IPR046347 GO:0003700|GO:0006355
Vimu2g00143 417 Gene3D - 131 180 - -
Vimu2g00143 417 PANTHER TRANSCRIPTION FACTOR TGA9 68 416 - -
Vimu2g00143 417 SMART brlzneu 128 191 IPR004827 GO:0003700|GO:0006355
Vimu2g00143 417 Pfam Seed dormancy control 214 289 IPR025422 GO:0006351|GO:0043565
Vimu2g00143 417 Coils Coil 151 178 - -
Vimu2g00143 417 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 135 150 IPR004827 GO:0003700|GO:0006355
Vimu2g00143 417 ProSiteProfiles DOG1 domain profile. 197 414 IPR025422 GO:0006351|GO:0043565
Vimu2g00143 417 Coils Coil 208 228 - -
Vimu2g00143 417 FunFam BZIP family transcription factor 131 180 - -
Vimu2g00143 417 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 130 174 IPR004827 GO:0003700|GO:0006355
Vimu2g00143 417 MobiDBLite consensus disorder prediction 82 134 - -
Vimu2g00143 417 CDD bZIP_HBP1b-like 132 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00143 Vimu-Chr2 866807 873041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00143 86 417 bZIP Transcription Factor Family AT3G12250 80.723 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu2g00143 DOG1 9.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00143 K14431 - gmx:100816123 649.047