Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00133 ATGGACCGCAGAGACTACCACCACCGTCCTGCTCATTTGTCACATGCGTCTCCTCCTGATTACTTTGTCCGCCAGGGGAATACAGCTTATCAAGACGATCTATTTTTGAGGAAGAGGACAAGGATGCGTCGGTGGCTTTGTTGCACTTGTCAGGTGGAGGAGTCTTACCCATCGAACGAGAATGAACACCTGAAAAGCCCAAGGAATTATGGAGACAACAACCAAAAAGGCTCAAAGGTGTCAGCTCCTGTCAAGCCTGAAACACAAAAGGCACCACCACCTATTGAAGCTCCAGCCCTATCTTTAGATGAGCTGAAGGAAAAGACTGACAACTTTGGTTCAAAGGCATTAATTGGTGAAGGATCGTATGGAAGGGTGTATTACGCAACCTTAAACAATGGAAAAGCAGTGGCTGTGAAAAAGCTTGATGTTTCATCTGAACCAGAATCAAACAACGAGTTTTTGACCCAGGCATGTCTCTCCTACCAACTAGGAGAAACCTACTGTTATGATTTATACACTTCAAGTATGTTGGGTTCTAGATTGTTTTGTCAATTTATTAGTCTTCTCATCCAGTGTTTGCTATTTCAGGTTTCCATGGTCTCAAGATTGAAGAATGATAATTTTGTTGAGTTGCACGGGTACTGCGTTGAAGGAAACCTCCGTGTACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCACGGTAGGAAGGGAGTTCAAGGTGCACAACCAGGGCCAACACTTGATTGGATACAGCGAGTTAGAATCGCAGTTGATGCAGCCAGGGGATTGGAGTATTTACATGAGAAAGTTCAGCCACCAATTATACACAGGGATATCAGATCAAGTAATGTGCTAATATTTGAAGACTACAAGGCTAAGATAGCTGACTTTAACCTTTCCAATCAGGCCCCTGACATGGCTGCCCGCCTTCATTCAACTCGTGTATTGGGAACCTTTGGTTATCATGCTCCAGAATATGCAATGACTGGGCAGTTGACTCAAAAAAGCGATGTCTATAGTTTTGGTGTTGTTCTTCTTGAGCTTCTTACAGGAAGAAAACCTGTTGACCACACCATGCCTCGAGGACAGCAGAGTCTTGTCACATGGGCTACTCCACGATTGAGTGAAGATAAAGTGAAACAGTGCGTTGACCCAAAACTGAAGGGAGAATATCCCCCTAAAGGAGTTGCTAAGCTTGCAGCTGTTGCAGCACTGTGCGTGCAGTATGAAGCTGAGTTTAGGCCGAATATGAGCATTGTTGTTAAAGCACTCCAACCACTTCTGAAGACTCCTGCTCCTGCTCCAGAAAGTTGA 1332 0.4452 MDRRDYHHRPAHLSHASPPDYFVRQGNTAYQDDLFLRKRTRMRRWLCCTCQVEESYPSNENEHLKSPRNYGDNNQKGSKVSAPVKPETQKAPPPIEAPALSLDELKEKTDNFGSKALIGEGSYGRVYYATLNNGKAVAVKKLDVSSEPESNNEFLTQACLSYQLGETYCYDLYTSSMLGSRLFCQFISLLIQCLLFQVSMVSRLKNDNFVELHGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLDWIQRVRIAVDAARGLEYLHEKVQPPIIHRDIRSSNVLIFEDYKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKTPAPAPES 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00133 443 MobiDBLite consensus disorder prediction 1 20 - -
Vimu2g00133 443 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Vimu2g00133 443 Gene3D Phosphorylase Kinase; domain 1 85 177 - -
Vimu2g00133 443 Pfam Protein tyrosine and serine/threonine kinase 196 430 IPR001245 GO:0004672|GO:0006468
Vimu2g00133 443 ProSitePatterns Tyrosine protein kinases specific active-site signature. 280 292 IPR008266 GO:0004672|GO:0006468
Vimu2g00133 443 Gene3D Transferase(Phosphotransferase) domain 1 230 438 - -
Vimu2g00133 443 ProSiteProfiles Protein kinase domain profile. 112 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00133 443 MobiDBLite consensus disorder prediction 57 96 - -
Vimu2g00133 443 SMART tyrkin_6 112 430 IPR020635 GO:0004713|GO:0006468
Vimu2g00133 443 SUPERFAMILY Protein kinase-like (PK-like) 92 430 IPR011009 -
Vimu2g00133 443 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 194 438 - -
Vimu2g00133 443 FunFam PTI1-like tyrosine-protein kinase 3 230 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00133 Vimu-Chr2 823533 827479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00133 46 431 Receptor kinase-like Gene Family AT4G02010 41.388 1.43e-84 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vimu2g00133 PK_Tyr_Ser-Thr 5.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00133 K13436 - mnt:21407434 690.263