Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00127 ATGTCCTTCCTTGACTCATCTGTCTCAGGTTCCAACCCCACCACCGTACCCATTCTCGAAGGGTTCAACCAAACACAAGCCTCCTATCCAAGACAAACACTGCACGTAGCACCGCCACCCATAATCACCAACGTCAAAGCAAGTGACTTACTGAAGCAACAATTGCTCAGTGTGCCAGCATTAGCGGCGGTTCTCGGTGGCTCTTCATCACGCAGCACGGCGAGGCCACAACCTTCACCAGCGCTCAGGCTTCATCGTTTTTTCGACGATTTTGCCTCTGAAACTACCCAGAAGAGTACTCAGCAGAAGGCAGCGACAGTGACTGACAAGGATACTGAAACTGAGAAGAAGTACGATGGTGGAATCCATAGCAACCCGCACAAGAAGAATCATCATTTTCTCGACGATTTTGCCTCTGAAACTACCCAGAAGAGTGCTCAGCAGAAGGCAACCGAAGCAGCGACAGTGACTGACAAGGATACCGAAACTGAGCAGAAGTACGATGGTGGAATCCATAGCAACCAGCACAAGAAGAATCATCGTTTTCTCGATGATTTTGCCTCTGAAACTACCCAGAAGAGTGCTCAGCAGAAGGCAAGCGAAGCAGCGACAGTGACTGAGAAGGATGCTGAAACTGAGAAGAAGTACGATGGTCGAATCCATAGCAATCCGCACAAGAAGAATGGGCCATACACGTGCCCAAAGTGTAAGGGCGTGTTTGATACTTCTCAGCGGTTTGCATCGCACGTGAGTTGGATTCACTACAAGTTTGAGTCGAAAGGTGAGAGAAAGAAGAGGTTGACGGCGAGATACTATAAGAGAAATCCCCATGTTGAATGGGTAAATGGTAAACCTACCATTGTTTGGGGAAATAACAATAACAGTGTCGTTGTTCCTCCTCCTCATCCTCCACCTAGGGTTCTTCCAAAAACTGAGTGTTTTGCTCAGGAGCTTTTTCCTCCTATTGGATATGTGAAACCGATTCCTCCTCCTATTGGATTTGGCAAACCGAATCCTCCTCCTTCTGGATTTGACAAACCGATTCCTCCTCCTCCTGGACTTGGAAAACCGATTCCTCCTCTTCCTATTGGATATGGGAAACCGATTCCTCCTCCTATTGGATTTGGCAAACCGATTCCTCCTCCTCCTGGATTTGACAAACCGATTCCTCCTCTTCCTATTGGATTTGGGAAACCGATTCCTCCTCCTCCTGGGTTTGAGAATGTAAATTATGCTACACCTGGGTTTGGAAAACCGATTCCTCCTCCTCCTGGGTTTGAGAATTTAAATTATGCTATACCTGGGTTTGGAAAACCGATTTCTCCTCCTCCTATTGGATTTGGAAAACCGATTCCTCCTCCTCTTATTGGATTTGGAAAACCGATTCCTCCTCCTCCTGGATTTGAGAATGTAAATTATGCTATACCTGGGTTTCATCTTCCTTTTCGATTTCATCAGAAATTAACTGATGCATCACCCAGGGGTGTCCAAATCAAACTGGAAGACATGGTGTAG 1515 0.4673 MSFLDSSVSGSNPTTVPILEGFNQTQASYPRQTLHVAPPPIITNVKASDLLKQQLLSVPALAAVLGGSSSRSTARPQPSPALRLHRFFDDFASETTQKSTQQKAATVTDKDTETEKKYDGGIHSNPHKKNHHFLDDFASETTQKSAQQKATEAATVTDKDTETEQKYDGGIHSNQHKKNHRFLDDFASETTQKSAQQKASEAATVTEKDAETEKKYDGRIHSNPHKKNGPYTCPKCKGVFDTSQRFASHVSWIHYKFESKGERKKRLTARYYKRNPHVEWVNGKPTIVWGNNNNSVVVPPPHPPPRVLPKTECFAQELFPPIGYVKPIPPPIGFGKPNPPPSGFDKPIPPPPGLGKPIPPLPIGYGKPIPPPIGFGKPIPPPPGFDKPIPPLPIGFGKPIPPPPGFENVNYATPGFGKPIPPPPGFENLNYAIPGFGKPISPPPIGFGKPIPPPLIGFGKPIPPPPGFENVNYAIPGFHLPFRFHQKLTDASPRGVQIKLEDMV 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00127 504 MobiDBLite consensus disorder prediction 204 224 - -
Vimu2g00127 504 ProSitePatterns Zinc finger C2H2 type domain signature. 233 254 IPR013087 -
Vimu2g00127 504 PANTHER PROTEIN DIAPHANOUS 76 405 - -
Vimu2g00127 504 MobiDBLite consensus disorder prediction 108 129 - -
Vimu2g00127 504 MobiDBLite consensus disorder prediction 141 176 - -
Vimu2g00127 504 MobiDBLite consensus disorder prediction 189 203 - -
Vimu2g00127 504 MobiDBLite consensus disorder prediction 189 226 - -
Vimu2g00127 504 MobiDBLite consensus disorder prediction 155 176 - -
Vimu2g00127 504 MobiDBLite consensus disorder prediction 94 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00127 Vimu-Chr2 783457 784971 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00127 204 274 C2H2 Transcription Factor Family AT5G22990 56.338 5.31e-19 86.3