Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00126 ATGGCCATGAATTCAGGCAAGTCCAACAACTTTAGCACCATCCTCTTCCCTCTATCGGCTTCAAACGCAGTCCAAAAAAGCGAAGCTTTAACGGTGAAAGGAATGAGCCAACTTGGGCTGAGCCAAAGGGTTAAGAGTCTCAGAAAAATCTCATTGGCCACGAAAAGAAGAGCAGTGATGTTTGATGGCACTGAAAAAGGGAAGGGAAAAGAGGTTCTGAGGGCTCAGTTTTCGGATCTGTCACCAACTTCAGTAGGTGTTGATGGTGGCGACACGGAGAGCATCTTAAGAGCGAGTCAGATAGTGAGAGAAAAACTGGAAAATGCAGTTTGCAACACTCGCACTAATAAGAAAGCCAAGGAAATGCTGCAAGCCAAACTTCTATTAGCATTCGCTTCTGAAAGTGATGCTGCTGTTGGTGAAACTTCCTCAACACCCCAAAGGGGAAGTTTTTTGAACCATTTTGCTTATCCCTTTCCGAACCGTTTTTCGCAGGCAGACACAGAGGTTGATAAAAGCATCACCCTTTGTGCAACTCCATTGAGGGTTTGTTTTCCCGACGAAAGCGTTTATGGGGGGCAGAAGACGAGAAACAGCGGCGTTTGTGGTAGCAGGGACAATGAGAGCGAATACGACGGTCGGATGCACAGCAATCCGTACAAGAAGAACGGGCCGTACACGTGTCCGAAGTGCGGGTTCGTGTTTGAGACGTCGCAGCGGTTTGCGGCGCACGTGAGTTCTATGCACTACAGGTACGAGACGAAGAGTGAGAGAAAGAAGAGAATGATGGCGAAAATCCGAAGGAGGAGTCTGCGTCTTGAATGGGAAAACGGTGACGATGGTCGGAGAAGAAATAGCAGTGTGTTTGCTCCTTCTGAAGTGAAGATTGAAACTGAGAGTGTTGTGAGGCTTCAACTTGGTCCTCCTCCTGGCTGGCCAAAAAGAGCTGAAGCTGCTGGAGCTGTCAGAATTAAATTGGAGCCATTAGACAATTGA 996 0.4779 MAMNSGKSNNFSTILFPLSASNAVQKSEALTVKGMSQLGLSQRVKSLRKISLATKRRAVMFDGTEKGKGKEVLRAQFSDLSPTSVGVDGGDTESILRASQIVREKLENAVCNTRTNKKAKEMLQAKLLLAFASESDAAVGETSSTPQRGSFLNHFAYPFPNRFSQADTEVDKSITLCATPLRVCFPDESVYGGQKTRNSGVCGSRDNESEYDGRMHSNPYKKNGPYTCPKCGFVFETSQRFAAHVSSMHYRYETKSERKKRMMAKIRRRSLRLEWENGDDGRRRNSSVFAPSEVKIETESVVRLQLGPPPGWPKRAEAAGAVRIKLEPLDN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00126 331 SMART c2h2final6 226 249 IPR013087 -
Vimu2g00126 331 MobiDBLite consensus disorder prediction 196 218 - -
Vimu2g00126 331 ProSitePatterns Zinc finger C2H2 type domain signature. 228 249 IPR013087 -
Vimu2g00126 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 254 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00126 Vimu-Chr2 772883 773878 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00126 205 276 C2H2 Transcription Factor Family AT2G18490 54.167 1.95e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu2g00126 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00126 - - vra:106770744 552.362