Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00117 ATGGTATCAGCTACAATTAGGCGAATTGTGTCACCCTGTTGGAGACCATCTGATACGGGTGAAATTTCTGGTAGGCATGGAGATTCAAGTGGGCGTGTTGATGGTTTGTTGTGGTACAAAGATTCTGGAAGACATGCGCATGGTGAATTCTCAATGGCAGTTATTCAAGCAAACAAATTGTTGGAGGATCAAAGCCAACTTGAATCTGGCCCCTTGAGCTTAACGGAAGGAACTCCTCTTGCAACTTTTGTTGGTATATACGATGGCCATGGAGGTCCAGAAGCTTCCCGGTTTATCAATGACAATCTCTTTAAAAATATCAAGAAATTTTCAAATGAAAATGATGGAATGTCAGCTGATGTTGTCCATAAAGCATTCTTGGCAACTGAAGAAGAATTTCTTTCTCTGGTAGAGAAGCAATGGCTGCATAAGCCCCCTCTAGCGTCAGTTGGATCTTGCTGCTTGATAGGCATAATATGCTGTGGGGAGCTATATATTGGAAATGCAGGAGATTCTCGAGCAGTACTAGGTAGAATGGATGAGGCTACAAAAGAGATTAAAGCTATTCAACTATCCGAGGAGCACAATGCTAGCATAGTATCTGTCAGAGAAGAGTTGCGCTCATTGCATCCTGATGATCCGCAGATAGTGGTTATGAAGCACCAGGTCTGGCGCGTGAAGGGTCTGATTCAGATTTCAAGATCCATTGGTGATGCCTACCTAAAGAAGGTAGAGTTTAATAGAGCACCATTATTGTCAAAATTTCGACTCCCGGAACCCTTTGAGCAGCCGATCCTTAAAGCTGAACCAGCAATACTGGTACAAAAGTTGTGTCCTCAAGATCAGTTTCTCATATTTGCATCAGATGGGTTATGGGAGCATCTGAGCAGTCAAGAAGCAGTTGACATTGTTCAAAGCTGTCCACGCAATGGAGTGGCAAAGAAACTTGTGAAAACAGCACTTTGTGAAGCTGCAAAGAAAAGAGAAACGAGATACTCAGACTTGAAAAAGATTGACAGAGGCGTGAGGAGACATTTCCACGATGACATCACTGTTATTGTTTTGTATCTTGATTCAAATTTTTTGGCCCGTGCCAATTCTCGTGTACCCTTGGTTTCTATCAAAGGAGGTGGTGAAAATGGTTATGGTATTGGAATTATAGATGCCTAG 1170 0.4248 MVSATIRRIVSPCWRPSDTGEISGRHGDSSGRVDGLLWYKDSGRHAHGEFSMAVIQANKLLEDQSQLESGPLSLTEGTPLATFVGIYDGHGGPEASRFINDNLFKNIKKFSNENDGMSADVVHKAFLATEEEFLSLVEKQWLHKPPLASVGSCCLIGIICCGELYIGNAGDSRAVLGRMDEATKEIKAIQLSEEHNASIVSVREELRSLHPDDPQIVVMKHQVWRVKGLIQISRSIGDAYLKKVEFNRAPLLSKFRLPEPFEQPILKAEPAILVQKLCPQDQFLIFASDGLWEHLSSQEAVDIVQSCPRNGVAKKLVKTALCEAAKKRETRYSDLKKIDRGVRRHFHDDITVIVLYLDSNFLARANSRVPLVSIKGGGENGYGIGIIDA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00117 389 CDD PP2Cc 50 357 IPR001932 -
Vimu2g00117 389 FunFam Phosphatase 2C family protein 38 367 - -
Vimu2g00117 389 Gene3D - 38 367 IPR036457 -
Vimu2g00117 389 SUPERFAMILY PP2C-like 58 358 IPR036457 -
Vimu2g00117 389 Pfam Protein phosphatase 2C 75 330 IPR001932 -
Vimu2g00117 389 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169
Vimu2g00117 389 SMART PP2C_4 41 355 IPR001932 -
Vimu2g00117 389 PANTHER PROTEIN PHOSPHATASE 39 355 IPR015655 GO:0004722|GO:0006470
Vimu2g00117 389 ProSiteProfiles PPM-type phosphatase domain profile. 46 357 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00117 Vimu-Chr2 663038 665800 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00117 3 379 PP2C-type Phosphatase Gene Family AT3G12620 73.016 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00117 K01102 - gmx:100807559 677.937