Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00114 ATGCAGCTTGTAGAATTGGACAAACGCTACAAGCTAGCTGAGTCGAAAGATTACGAGGTAAAGACGGCATTTCTGAAATGGGCTATTTCATGCGGATTGAAAACTTACTACGATGAAGTGGAGAAAACCTTAAAAGAAGTTGGGAGGCTTAAGTATATTCAACCACTTTATACTGCTCTTGTGAGTGGGAGCGAAGATGATAAAGAATTTGCCAATAGAGTATTTTCAGAAGCTCGTGAGTCTTACCATCCGATTGCTCAAGGTGTTGTTGAGGGCATACTTTCCGGTAATCCGCATAATATGCTGTGGGAGGAGCTCTATATTGGAAATGCAGGAGATTCTCGAGCAGTACTAGGTAGAATGGATGAGGCTATAAAAGAGATTAAAGCTACTCAACTATCCGAGGAGCACAATGCTAGCATAGTATCTGTCAGAGAAGAGTTGCGCTCATTGCATCCTGATGATCCGCAGATAGTGGTTATGAAGCACCAGGTCTGGCGCGTGAAGGGTCTGATTCAGGAACCTGAATTGAGTTTTACCATCAGATTCAGGGAACAATGTTTGATTCAATTCATTGCTGTACTTTTATGTCCTGAGATAATCTGGCATATGTGGATGGATGTGGCTGGTTGGGAATCGAATTTAAACATACTGATCAAGTTTGTTTTCATCTTCCCACTGTCCAAATTGAAACATGCTGTTCAGTATAGGTGTATTAAGTTTCTTGTTAATACTCCAACCACATTTGAGGCTTCCGATCATGATTATTTGATGGCACAGCCAACACGGAATGAAGATTGTATTTCAAGATCCATTGGTGATGCCTACCTAAAGAAGGTAGAGTTTAATAGAGCACCATTATTGTCAAAATTTCGACTCCCGGAACCCTTTGAGCAGCCAATCCTTAAAGCTGAACCGGCAATACTGGTACAGAAATTGTGTCCTCAAGATCAGTTTCTCATATTTGCATCAGATGGGTTATGGGAGCATCTGAGCAGTCAAGAAGCAGTTGACGTTGTCCAAAGCTGTCCACGCAATACTTCACCTATCTTACTCCTATTACTCATACGGCCTTTTTTGGACTTCACGATTTCGTTGGTCACGATGGTCTGGATTAACTATGGGCCCTCTCGCTTCTTTACTACCACGGCCCAGGCCCAGTCCCACTTCTTCATTGGGCTTGACCAGGTAATAAAGCAGAAGGAAATTGTTGTTGAAACAGAGAAACAGAGAAACAGAGAGTTTGAAGTTACTGCAATGGCAGCGGTTGACCCTCACTCGTTCACGGAGGCATCGCAGCCACGGACGAAGCACGTGTCCCTGAGTCTGTACCTGGACTTCTCGAGCTCCATCATTCACGCCTCCGGGCTCTTCCTTCTGGAAAGCCCACACCGGGGGCCATTCTCCCTGGACACGAGGTCCCTCACCATCCATGGCATCATCGACCCCACAAGCAGAGCCTCTCTCCCATTCACTCTCTCCTCGCCGGACCCCATAAAAGGATCGAAGCTCTCCATCACCCTCTCCGATCACTCCTCTTTTCTCATCATCTACTCCACCTCCCCCTCCTCCTCCGCACTCCAATGGCTCCTACCACCCCAAACCTTCGCCAAGTCCCACCCTTTCGTCTACACCCAATGCCAGGCCATCCACGCTCGCTCCGTCTTCCCCTGCCAGGACACCCCCGCCGTCCGGATACGCTACTCCGCGCGCCTCAACATCCCTTCGGAGCTCTCCGCTGTCATGGCGGCGCGCCACGTCCAGCGTCGTTCGCCCAAAAACGACGACGCTTTGGACGTCGCTACACCCTCTCCATGGTGCGCGGAAGGGAGGGTGGTGGAGGAGTTCGAGATGGAGCAGTCCGTGCCGCCTTACCTCTTCGCGTTCGCTGTCGGGGCGCTTGGGAATAGGGAGGTGGGGCCCAGGACGAGGGTGTACGCGGAGGATGTGGCCTCTGTTTTGGACTCGGCGGCGGCGGAGTTCGCCGGGACGGAGGAGATGATCAGGGAAGGGGAGAGGCTGTTCGGACCGTACGAGTGGGAGAGGTTTGATTTGTTGGTTTTGCCGCCTAGTTTTCCCTATGGGGGGATGGAGAATCCAAGGATGGTGTTCTTGACGCCCACTGTTGTTAAGGGGGATGCGACCGGGGCGCAGGTTGTGGCTCATGAGCTTGCTCATAGTTGGACTGGGAATTTGATTACCAACAAGAACAATGAACATTTCTGGTTGAACGAGGGCTTCACTACTTATGCGGAGAGAAGGATTGTGGAGGCTGTACAAGGAGAACAAATAGCCGCATTGAACACTGGAATTGGTTGGAGGGGTTTGATTGGGGATGTTGAGAGGTTCGAGGACAACTTGGAATTTACAAAACTAAAAAATAATCAGGAAGGAATTGACCCAGATGATGTGTATTCTCAGGTTCCATATGAGAAAGGTTTCCAGTTCTTATGGCGCATTGAACGACAGGTTGGGAGACCTGCATTCGATGAGTTTCTGAAGAAATATATTGCTACCTTCAAGTTCCAATCAATTGATACTGAAACATTCCTTGACTTCCTTAAAGCTAACATACCTGGCATAGAGAACCAAATTGACTTGGTGCTGTGGACGGAAGGTACTGGCATTCCTCCTGATGCTTATGAACCTGATTCATCTATTTATAAACAGATTGTTTCACTGGCAAATGAGTTCAAAAATGGGAGGATGGCAAGGGAAGATGAAGTTGCTGATTGGCATAGTCAGGAGTGGGAGCTCTACTTGGAAAACTTGCCGGAACCGATTGAAGCTTCTCAGCTTGTAGACTTGGACTCACGCTACAAGCTAGCTGAGTCGAAAGATTACGAGGTAAAGGTGGCATTTCTCAAAAGGGCCATTTCATGCGGATGCAAAACTTACTACAGTGAAGTGGAGAAAACCTTAAAAGAAGTTGGGAGGGGGAAGTATCTTCGTCCACTTTATACTGCTCTTGTGAGTGGGAACGAAGATGGTAAAGTATTTGCCAAAACAGTATTTTCAGAAGCCCGTGAGGGTTACCATCCGATTGCTCAAGGTGTTGTTGAGGCCATACTTTCCAAGAATCTGTAG 3087 0.4807 MQLVELDKRYKLAESKDYEVKTAFLKWAISCGLKTYYDEVEKTLKEVGRLKYIQPLYTALVSGSEDDKEFANRVFSEARESYHPIAQGVVEGILSGNPHNMLWEELYIGNAGDSRAVLGRMDEAIKEIKATQLSEEHNASIVSVREELRSLHPDDPQIVVMKHQVWRVKGLIQEPELSFTIRFREQCLIQFIAVLLCPEIIWHMWMDVAGWESNLNILIKFVFIFPLSKLKHAVQYRCIKFLVNTPTTFEASDHDYLMAQPTRNEDCISRSIGDAYLKKVEFNRAPLLSKFRLPEPFEQPILKAEPAILVQKLCPQDQFLIFASDGLWEHLSSQEAVDVVQSCPRNTSPILLLLLIRPFLDFTISLVTMVWINYGPSRFFTTTAQAQSHFFIGLDQVIKQKEIVVETEKQRNREFEVTAMAAVDPHSFTEASQPRTKHVSLSLYLDFSSSIIHASGLFLLESPHRGPFSLDTRSLTIHGIIDPTSRASLPFTLSSPDPIKGSKLSITLSDHSSFLIIYSTSPSSSALQWLLPPQTFAKSHPFVYTQCQAIHARSVFPCQDTPAVRIRYSARLNIPSELSAVMAARHVQRRSPKNDDALDVATPSPWCAEGRVVEEFEMEQSVPPYLFAFAVGALGNREVGPRTRVYAEDVASVLDSAAAEFAGTEEMIREGERLFGPYEWERFDLLVLPPSFPYGGMENPRMVFLTPTVVKGDATGAQVVAHELAHSWTGNLITNKNNEHFWLNEGFTTYAERRIVEAVQGEQIAALNTGIGWRGLIGDVERFEDNLEFTKLKNNQEGIDPDDVYSQVPYEKGFQFLWRIERQVGRPAFDEFLKKYIATFKFQSIDTETFLDFLKANIPGIENQIDLVLWTEGTGIPPDAYEPDSSIYKQIVSLANEFKNGRMAREDEVADWHSQEWELYLENLPEPIEASQLVDLDSRYKLAESKDYEVKVAFLKRAISCGCKTYYSEVEKTLKEVGRGKYLRPLYTALVSGNEDGKVFAKTVFSEAREGYHPIAQGVVEAILSKNL 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00114 1028 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 640 877 - -
Vimu2g00114 1028 CDD M1_LTA4H 424 870 IPR034015 -
Vimu2g00114 1028 Pfam Peptidase family M1 domain 671 856 IPR014782 GO:0008237|GO:0008270
Vimu2g00114 1028 FunFam Leukotriene A(4) hydrolase 732 880 - -
Vimu2g00114 1028 PANTHER LEUKOTRIENE A-4 HYDROLASE 411 1026 IPR034015 -
Vimu2g00114 1028 Gene3D - 633 731 - -
Vimu2g00114 1028 Pfam Protein phosphatase 2C 269 344 IPR001932 -
Vimu2g00114 1028 Pfam Protein phosphatase 2C 81 140 IPR001932 -
Vimu2g00114 1028 Gene3D Neutral Protease Domain 2 732 881 IPR027268 -
Vimu2g00114 1028 Gene3D tricorn interacting facor f3 domain 435 632 IPR042097 -
Vimu2g00114 1028 SUPERFAMILY ARM repeat 3 94 IPR016024 -
Vimu2g00114 1028 PRINTS Membrane alanyl dipeptidase (M1) family signature 553 568 IPR001930 GO:0006508
Vimu2g00114 1028 PRINTS Membrane alanyl dipeptidase (M1) family signature 692 702 IPR001930 GO:0006508
Vimu2g00114 1028 PRINTS Membrane alanyl dipeptidase (M1) family signature 719 734 IPR001930 GO:0006508
Vimu2g00114 1028 PRINTS Membrane alanyl dipeptidase (M1) family signature 738 750 IPR001930 GO:0006508
Vimu2g00114 1028 FunFam Leukotriene A(4) hydrolase 633 731 - -
Vimu2g00114 1028 ProSiteProfiles PPM-type phosphatase domain profile. 1 424 IPR001932 -
Vimu2g00114 1028 CDD PP2Cc 104 349 IPR001932 -
Vimu2g00114 1028 Gene3D - 97 357 IPR036457 -
Vimu2g00114 1028 SUPERFAMILY PP2C-like 104 345 IPR036457 -
Vimu2g00114 1028 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 424 632 IPR042097 -
Vimu2g00114 1028 SMART PP2C_4 5 367 IPR001932 -
Vimu2g00114 1028 Gene3D - 1 95 IPR038502 -
Vimu2g00114 1028 Gene3D - 885 1025 IPR038502 -
Vimu2g00114 1028 SUPERFAMILY ARM repeat 897 1024 IPR016024 -
Vimu2g00114 1028 Pfam Leukotriene A4 hydrolase, C-terminal 912 1024 IPR015211 GO:0008237|GO:0008270
Vimu2g00114 1028 Pfam Leukotriene A4 hydrolase, C-terminal 3 94 IPR015211 GO:0008237|GO:0008270
Vimu2g00114 1028 SMART Leuk_A4_hydro_C_2 886 1024 IPR015211 GO:0008237|GO:0008270
Vimu2g00114 1028 SMART Leuk_A4_hydro_C_2 1 94 IPR015211 GO:0008237|GO:0008270
Vimu2g00114 1028 Pfam Peptidase M1 N-terminal domain 510 590 IPR045357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00114 Vimu-Chr2 645697 652980 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00114 268 346 PP2C-type Phosphatase Gene Family AT3G12620 77.215 1.72e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00114 K01254 - gmx:100807911 1042.72