Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00113 ATGGCATCAACATCTGGCGTTGGTAACAGCTCAATACTCATCAAAGATGTAGCTTCGACCTTTCGTGCATATCCTCCTCCTCTAGCAAAATATGAGGAAGTTGTAGACAATTCCCAGCTCTTCATGTTTACCTTGGAGAAGCTTCACGCATCTATGGGTACCAAATACATGATTCCTACTGTTGGAGGAAGAGAACTAGATTTGCATCGCCTCTTTGTTGAAGTGACTTCCCGGGGAGGGATTGCAAAAATAATTAGAGAGAGGAAATGGAAAGACGTAACCTCAGTCTTCAATTTTCCATCAACAGCCACAAATGCTTCTTTTGTGTTGAGGAAGTACTATGCTTCACTGCTTTACCATTATGAACAAATCTACTATTTTAAATCCCGGGAATGGGACCCTACTGCTCCTGATGTTTTGCAGAACCAATCAACCCTGGCAGTTCCTCCTCCAAAAATTCAGTTTCCACAGTCTTTGCCAGAAATTCAACCAGCCGTCTTTCAACAGTCAAATGTTAATGCTGGTAAATTGCCTGAAGTAGTAATGCTTATTCTCTTGTGGTCTTCAGCAATGACAACATCTTCGGCTGGATCTCCGGTCATCGGCGTCATTGACGGGAAATTTGAAAGTGGCTATCTAGTTACTGTCACGATTGGTTCAGAGAAACTCAAAGGAGTACTTTATCAAGCTCCACAGAATCCTATATTGCACGAATCCCATCATAGTGCCCCAGCTAATAATACCAACGCTTCTTCTTCAGTGGGTGTTCATCGTCGGAGACGCAGGAAGAAATCAGAAATAAAAAGAAGAGATCCTGCTCATCCAAAACCTAACAGAAGTGGGTACAATTTCTTCTTTGCTGAACAGCATGCAAGACTAAAGGCACTTCACCATGGAAAAGACAGAGAGATTAGTAGGATGATTGGTGAACTTTGGAACAAGTTAAAAGAATCAGAAAAGACGGTTTATCAAGAGAAGGCCATGAAAGATAAAGAGAGGTACAGAGCAGAAATGGAGGATTATAGAGAGAAACTGAAGATGGGTCAAGTTATCAGTGACGCTGTGCCCCTTCAGCAACGACTTCCTGAAGCAGATGCAGACATGTTGGATGTTGACTTAAAAACGGATGAAGCCGAGGCAGATTCGCTTCAAACTCCAGAGGAGAGTAGTTCCGGTGGAAGTGATTATGAAGATTATAATAAAACTGCAGAAAGAGGTTTTGATATGGATTCATTACCTGTAATAGGAATGGGTGCAGAAACAAGCTATTTGGGTTCGGAAGATAAGTCATCCAAAGGGGGTTTGTGA 1308 0.4213 MASTSGVGNSSILIKDVASTFRAYPPPLAKYEEVVDNSQLFMFTLEKLHASMGTKYMIPTVGGRELDLHRLFVEVTSRGGIAKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASLLYHYEQIYYFKSREWDPTAPDVLQNQSTLAVPPPKIQFPQSLPEIQPAVFQQSNVNAGKLPEVVMLILLWSSAMTTSSAGSPVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNPILHESHHSAPANNTNASSSVGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKALHHGKDREISRMIGELWNKLKESEKTVYQEKAMKDKERYRAEMEDYREKLKMGQVISDAVPLQQRLPEADADMLDVDLKTDEAEADSLQTPEESSSGGSDYEDYNKTAERGFDMDSLPVIGMGAETSYLGSEDKSSKGGL 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00113 435 PRINTS High mobility group (HMG1/HMG2) protein signature 307 326 - -
Vimu2g00113 435 PRINTS High mobility group (HMG1/HMG2) protein signature 326 346 - -
Vimu2g00113 435 MobiDBLite consensus disorder prediction 237 282 - -
Vimu2g00113 435 MobiDBLite consensus disorder prediction 377 412 - -
Vimu2g00113 435 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 17 389 - -
Vimu2g00113 435 SUPERFAMILY HMG-box 263 346 IPR036910 -
Vimu2g00113 435 SMART bright_3 36 127 IPR001606 GO:0003677
Vimu2g00113 435 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 275 342 IPR009071 -
Vimu2g00113 435 CDD HMG-box_AtHMGB9-like 275 341 - -
Vimu2g00113 435 FunFam High mobility group B protein 15 29 142 - -
Vimu2g00113 435 Coils Coil 324 344 - -
Vimu2g00113 435 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Vimu2g00113 435 Gene3D - 21 136 IPR036431 GO:0003677
Vimu2g00113 435 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Vimu2g00113 435 SMART ARID_2 32 122 - -
Vimu2g00113 435 MobiDBLite consensus disorder prediction 237 254 - -
Vimu2g00113 435 SMART hmgende2 274 343 IPR009071 -
Vimu2g00113 435 SUPERFAMILY ARID-like 35 134 IPR036431 GO:0003677
Vimu2g00113 435 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Vimu2g00113 435 FunFam High mobility group B protein 15 257 352 - -
Vimu2g00113 435 Gene3D High mobility group box domain 259 353 IPR036910 -
Vimu2g00113 435 MobiDBLite consensus disorder prediction 255 269 - -
Vimu2g00113 435 Pfam HMG (high mobility group) box 275 342 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00113 Vimu-Chr2 641843 645104 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00113 1 373 ARID Transcription Factor Family AT1G04880 58.442 2.95e-130 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vimu2g00113 ARID 2.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00113 - - gmx:100783284 716.842