Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00112 ATGGCAGCATGTTCAGTGATCGGAGTCATTGATGGGAAATTTGAAAGTGGGTACATAGTTACAGTGAGAATGGGTTCGGAGATACTGAAAGGTATACTGTATGAAGTGCCACAGAAGCACACTCCATTGCCAACATCCAATCGAAGAAAGAAATCAGACACCAAAAAGAGAGTTCCTGGTCGTCCAAAACATAGCAGAAGTGGCTACAATTTCTTCTATGCTGAACAGCATGCAACACTCAAGCCACTTCACCATGGAAAGGAGGGAGAGATTCCTAGGATGATCGCTCAACTCTGGTCAAAGTTAAATCTATCCCAGAAGATGATTTATCAAGAGATGGCTATGAAGGATAAAGAAAGGTACATGGTAGAAATGGAGGATTATTTGGAGAAACTGAAAATGGGTGCAGTCATCACTGATGCTGTGCCACTTCGACAATGGCCGCCCAAACAGGACACAGACATGTTGGATGAAGTTGAGACTAACAAAGGCAAGGAAGATGATTATAAAGCTGCAGATAGAGGTTTTCATATGAATTCAATGAATGCATCGTATAGGAGTGGAGATTGA 570 0.4211 MAACSVIGVIDGKFESGYIVTVRMGSEILKGILYEVPQKHTPLPTSNRRKKSDTKKRVPGRPKHSRSGYNFFYAEQHATLKPLHHGKEGEIPRMIAQLWSKLNLSQKMIYQEMAMKDKERYMVEMEDYLEKLKMGAVITDAVPLRQWPPKQDTDMLDEVETNKGKEDDYKAADRGFHMNSMNASYRSGD 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00112 189 CDD HMG-box_AtHMGB9-like 62 128 - -
Vimu2g00112 189 MobiDBLite consensus disorder prediction 151 173 - -
Vimu2g00112 189 Pfam HMG (high mobility group) box 62 128 IPR009071 -
Vimu2g00112 189 SMART hmgende2 61 130 IPR009071 -
Vimu2g00112 189 MobiDBLite consensus disorder prediction 40 67 - -
Vimu2g00112 189 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 62 129 IPR009071 -
Vimu2g00112 189 MobiDBLite consensus disorder prediction 149 173 - -
Vimu2g00112 189 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 163 - -
Vimu2g00112 189 SUPERFAMILY HMG-box 50 133 IPR036910 -
Vimu2g00112 189 Gene3D High mobility group box domain 46 138 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00112 Vimu-Chr2 636243 636899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00112 1 155 ARID Transcription Factor Family AT1G04880 50.000 4.96e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vimu2g00112 HMG_box 2e-11 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00112 - - vra:106770743 332.028