Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00088 ATGTCATCTCGCATTCTTGCGGACAATTCATTACCGATCAATAATGTCACCACTCCCTACTTCGACTTAATGGAAATGGACGACCTCACGCGCCGCCCCGCCTCCGCTGAGATGCCCACCCTCGGCCAGCTCCTCAAGCACGTCGGGGACGCCAGGAAGGAAGCCTCCGGCGACGGAAGCGAGACGCCTGTGCATCACGCGCTGGATATAGTTGACGCCGCCGGAGTTGGGCCTCGCTCGCTGCCATTCGTCCTCTCCTTCAGCAACCTCACATACAGCGTCAAGGCGCGCCGCAAAATGACCTTCTCCTCTGTCTTTCCCCGCCGTGGAAGCCGCCTCGGCGCGTCCGCGGTGGCCGAGGCTCCTGCCGTTGGCGAAAGCATGTTCAGGCGGACCAAGACGCTGCTGAACGATATCTCCGGCGAGGCACGCGACGGCGAGATCATGGCGGTCCTCGGCGCCAGTGGTTCTGGAAAGTCAACACTGATCGACGCGCTGGCGAACCGAATCGCCAAGGGAAGTCTAAAAGGCACGGTGGCGCTGAACGGCGAAACGCTGGAATCGCGTCTTCTGAAGGTGATCTCTGCGTACGTGATGCAAGACGACCTGCTCTTTCCGATGCTCACCGTGGAAGAGACTTTGATGTTCGCAGCGGAGTTCAGACTTCCGCGCACGCTCTCCAAGTCGAAGAAAAATGCCCGCGTCCAGGCTCTCATCGAGCAGCTAGGACTTCGGAACGCCGCGAAAACAGTTATCGGCGACGAAGGTCACCGCGGAGTATCAGGCGGAGAGCGTCGGAGAGTTTCTATCGGCATCGACATTATCCACGACCCCATCCTGCTGTTCTTGGACGAGCCAACCTCGGGACTTGACTCCACCAGCGCGTTCTTGGTGGTGAAGGTTTTGCAGAGAATCGCACAGAGCGGAAGCATCGTGATCATGTCCATTCACCAGCCGAGTTACCGAATCCTAGGGCTTCTGGACCGCATGATCTTCTTATCACGGGGCCAAACCGTTTACAGCGGTTCACCGACGCAGTTACCGGTTTTCTTCTCCGAGTTCGGTCATCCTATTCCGGAAACCGACAACAGAACAGAGTTCGCGTTGGACCTGATTCGCGAACTGGAAGGCTCCCCCGGCGGAACGAAGAGCTTGGTCGAGTTCAACAAATCGTGGCAAAGCATGACGAAGCACCATCAAACGACAACGGAAGCGGAACGGAACGGGTTGTCGTTGAAGGAAGCAATAAGCGCAAGCATTTCGCGAGGGAAACTGGTTTCTGGAGCCACGAACACGAACCCGAACCCGTCGTCGATGGTGCCAACTTTTGCGAATCCGTTTTGGATTGAGATGGCGACGCTGTCGAAGCGGTCGTTCTTGAACTCGAGAAGAATGCCGGAGTTGTTTGGGATAAGATTGGGTGCGGTGATGGTGACGGGGTTCATTCTTGCCACCATGTTTTGGCAACTGGATAACTCTCCCAAAGGAGTGCAAGAGAGGCTGGGATTCTTCGCCTTTGCCATGTCAACAACTTTCTATACAACTGCCGACGCGCTTCCCGTCTTCCTCCAAGAACGCTACATTTTCATGAGGGAAACTGCTTACAACGCTTACAGAAGAATCTCCTATTTGGTGTCGCATGCGCTGGTTGCGTTGCCGGCACTAGCGTTTCTCTCGTTGGCTTTCGCGGCAACCACTTTCTGGGCCGTGGGCCTGGACGGTGGAGTTTCGGGCTTTTTGTTTTATTTCCTGATAATTTTTGCGTCGTTTTGGGCTGGGAATTCGTTCGTGACGTTCCTTTCCGGTGTGGTGCCTCACGTGATGCTGGGTTACACCATCGTGGTTGCTATTCTGGCGTATTTCTTGCTGTTCAGTGGATTCTTCATCAACAGGGATAGGATTCCCAGTTACTGGATTTGGTTTCACTACCTGTCACTGGTGAAGTACCCTTATGAAGCTGTTTTGCAGAACGAGTTCGATGACCCCGTGAAGTGCTTCGTGAGGGGAGTACAGATTTTCGATAACACGCCTCTTGGGTCGGTGCCACAGGCTCTGAAGGTTAAGCTTTTGGACGCCATGAGCAACACTCTCGGAATGAACATCACCACCTCCACCTGTTTGACCACCGGTTCCGACATTTTGCGGCAGAACGGAGTCACCGATTTGACCAAGTGGAACTGCTTGTGGGTCACCGTCGCCTGGGGATTCTTCTTTAGATTCCTGTTCTACTTCTCCCTCTTGCTGGGTAGCAAGAACAAGAGGAGCTGA 2268 0.5476 MSSRILADNSLPINNVTTPYFDLMEMDDLTRRPASAEMPTLGQLLKHVGDARKEASGDGSETPVHHALDIVDAAGVGPRSLPFVLSFSNLTYSVKARRKMTFSSVFPRRGSRLGASAVAEAPAVGESMFRRTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGTVALNGETLESRLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKNARVQALIEQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFLVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPTQLPVFFSEFGHPIPETDNRTEFALDLIRELEGSPGGTKSLVEFNKSWQSMTKHHQTTTEAERNGLSLKEAISASISRGKLVSGATNTNPNPSSMVPTFANPFWIEMATLSKRSFLNSRRMPELFGIRLGAVMVTGFILATMFWQLDNSPKGVQERLGFFAFAMSTTFYTTADALPVFLQERYIFMRETAYNAYRRISYLVSHALVALPALAFLSLAFAATTFWAVGLDGGVSGFLFYFLIIFASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPSYWIWFHYLSLVKYPYEAVLQNEFDDPVKCFVRGVQIFDNTPLGSVPQALKVKLLDAMSNTLGMNITTSTCLTTGSDILRQNGVTDLTKWNCLWVTVAWGFFFRFLFYFSLLLGSKNKRS 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00088 755 SMART AAA_5 145 337 IPR003593 GO:0016887
Vimu2g00088 755 Pfam ABC-2 type transporter 317 377 IPR043926 GO:0140359
Vimu2g00088 755 Pfam ABC-2 type transporter 453 659 IPR013525 GO:0016020|GO:0140359
Vimu2g00088 755 ProSitePatterns ABC transporters family signature. 260 274 IPR017871 GO:0005524|GO:0016887
Vimu2g00088 755 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 66 741 - -
Vimu2g00088 755 FunFam ABC transporter G family member 6 125 351 - -
Vimu2g00088 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 347 IPR027417 -
Vimu2g00088 755 CDD ABCG_EPDR 84 342 - -
Vimu2g00088 755 Gene3D - 126 349 IPR027417 -
Vimu2g00088 755 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 119 360 IPR003439 GO:0005524
Vimu2g00088 755 Pfam ABC transporter 136 288 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00088 Vimu-Chr2 500843 503110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00088 135 320 Calmodulin-binding Proteins AT2G36910 30.688 1.04e-11 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00088 K05681 - gmx:100803658 1318.91