Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00086 ATGGCCAATGCAAATTCTCTCTGTGTGTCTTTTCCTGGCTTCAAACTAAAACTTTGTCTGACTCTGATTGCATGTGTAATTGGGGTTACTTCAGCTCAGTTATCTGATAAATTCTATGAAAAAAGTTGCCCTGCTGCTCTTGCCACCATAAGGAAAGCAGTGAAAGAAGCTGTGCACAAGGAGTTTCGCATGGGGGCATCCTTGCTCCGACTCCATTTCCATGACTGCTTCGTTCAAGCAAATAACTCCTCCATGGGATGTGATGCATCAGTGTTGTTAGACGACACGGATACTTTTACTGGAGAGAAGAATTCATTTCCAAATGCTAACTCTCTTAGAGGTTTTGATGTGATAGATAACATAAAATCAAGGTTGGAGAACATGTGCCAAGGTGTTGTCTCTTGTGCAGACATCTTAGCCGTTGCTGCGAGAGATGCTGTTTTTGAACTTGGTGGACCAAGATGGGAAGTACCATTAGGCAGAAGAGATTCAACCACAGCAAGTTTAGCAGAATCTAATTCAGACTTACCAGCTCCTTTTTTCGATCTCGATAGCCTCATCAGTGCTTTCGCCAAGAAAAATTTCACTGTGGAAGAACTAGTTACTTTATCAGGTGGTCACTCAATAGGACTGGTGAGGTGCCGTTTCTTCAGAAAGAGGATTTATAACGAGAGCAACATCGACCAGACATTTGCAGAAGAAAAGCGACAAGAGTGTCCCTTCGAAGGTGGTGACGACAACTTAAGTGCTTTCGATTCGACCAGTTCATTCAGATTTGACAATGCGTTTTACAAGAACTTGTTGCAGCAAAAGGGTGTGGTCCACTCCGATCAACAGCTCTTGAACGACATCAATGGAACTGATAGCCCCACAAAGGATCAAGTAGTTAATTATGCGAGAAACATGGGAAAATTCAAGAAGGATTTCGCAGCTGCAATGTTGAAGATGAGCATGATGACACCACTTACTGGTTCAGACGGTGAGATCCGCCAAAACTGCAGCCGAGTGAATCCTCCTTCAACCTGA 1026 0.4347 MANANSLCVSFPGFKLKLCLTLIACVIGVTSAQLSDKFYEKSCPAALATIRKAVKEAVHKEFRMGASLLRLHFHDCFVQANNSSMGCDASVLLDDTDTFTGEKNSFPNANSLRGFDVIDNIKSRLENMCQGVVSCADILAVAARDAVFELGGPRWEVPLGRRDSTTASLAESNSDLPAPFFDLDSLISAFAKKNFTVEELVTLSGGHSIGLVRCRFFRKRIYNESNIDQTFAEEKRQECPFEGGDDNLSAFDSTSSFRFDNAFYKNLLQQKGVVHSDQQLLNDINGTDSPTKDQVVNYARNMGKFKKDFAAAMLKMSMMTPLTGSDGEIRQNCSRVNPPST 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00086 341 Gene3D - 37 334 - -
Vimu2g00086 341 ProSitePatterns Peroxidases proximal heme-ligand signature. 199 209 IPR019793 -
Vimu2g00086 341 Gene3D Peroxidase, domain 2 177 316 - -
Vimu2g00086 341 PRINTS Haem peroxidase superfamily signature 65 79 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00086 341 PRINTS Haem peroxidase superfamily signature 199 214 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00086 341 PRINTS Haem peroxidase superfamily signature 252 267 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00086 341 PRINTS Haem peroxidase superfamily signature 151 163 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00086 341 CDD secretory_peroxidase 33 336 IPR033905 GO:0004601|GO:0042744
Vimu2g00086 341 PANTHER PEROXIDASE 72-RELATED 28 336 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00086 341 FunFam Peroxidase 177 316 - -
Vimu2g00086 341 ProSitePatterns Peroxidases active site signature. 65 76 IPR019794 GO:0004601
Vimu2g00086 341 PRINTS Plant peroxidase signature 43 62 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00086 341 PRINTS Plant peroxidase signature 311 324 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00086 341 PRINTS Plant peroxidase signature 67 87 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00086 341 PRINTS Plant peroxidase signature 266 283 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00086 341 PRINTS Plant peroxidase signature 198 210 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00086 341 PRINTS Plant peroxidase signature 132 142 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00086 341 PRINTS Plant peroxidase signature 113 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00086 341 PRINTS Plant peroxidase signature 151 166 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00086 341 PRINTS Plant peroxidase signature 250 265 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00086 341 SUPERFAMILY Heme-dependent peroxidases 33 337 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu2g00086 341 ProSiteProfiles Plant heme peroxidase family profile. 33 337 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00086 341 Pfam Peroxidase 51 284 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00086 341 FunFam Peroxidase 37 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00086 Vimu-Chr2 487975 489403 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00086 29 337 Peroxidase AT5G05340 53.376 1.43e-116 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00086 K00430 - gmx:100802244 501.516