Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00078 ATGGAGTTTTTGAAACATGAAACACGGACAGTGTTCCATGCAAATGCAACTAATGGGAGCAGAAGCACATTGAATCTGAGTGCCCTCATTACTACATTGCCCGAAGATGGAGATGGTAAAATGATCTCAAACTCCGACCCTGTAGAACCACTCACTACGGCCGCGGCCACCTCCGCGGTCGCGGTAACCGCTTCGTCTTCCGCTGAAGGTCAGCCTGCACCGCCGGCGACGCCAAACATTGTGATGTCCTCCAAGGATCACGATTCTCTCTTCAGCGGTGGCGGCATCAGGTTCAGCTATGGATATTCCAGTTTCAAGGGTAAAAGGTCATCAATGGAGGATTTCTTTGAGACCACCATATCAGAGGTCGATGGTCAGATGGTTGCGTTTTTTGGTGTTTTTGATGGATCCTCTTATTGTTTGACTTCTGTCCCAGTGTCTGTTGCACTCCTCATGTTTGGTGGCTGCACTTCTCCGTTTGCTGTCTTCAGCAGTCTCAGACACACTCTGACCCTTCTAGTCTTTCGTCCTGGGTGCACTGCCCCTGTAGATATTCTGTACTGGGATGATGATTGTCATGGAGGTTCCCGGACTGCAGAATATTTGAAAAACAATCTATTTAAGAATTTGAGTAGCCATCCTGACTTTATCAAAGACACAAAGACTGCTATAGTTGAAGCATTTAAACAGACAGATATCGACTACCTCAATGAGGAAAAGGGCCATCAAAGAGATGCTGGGTCAACTGCATCAACAGCTATGTTGTTGGGGGACCGAATTGTTGTTGCAAATGTTGGTGATTCCAGAGTAGTTGCAAGTAGAGCTGGTTCAGCTATTCCTTTGTCTATTGATCACAAGCCCGATAGATCTGATGAACGTCAAAGGATTGAAAAGGCCGGGGGGTTTATAATCTGGGCTGGAACATGGAGGGTTGGTGGTGTTCTTGCTGTGTCCCGTGCATTTGGCGACAAACTTCTTAAGCCTTATGTGGTTGCTGACCCTGAAATTCAGGAGGAAGAAATTGACGGTGTAGATTTTATTATAATTGCTAGTGATGGCCTTTGGAATGTCATATCAAACAATGAGGCCGTGTCGTTAGTACAAAATATCACAGATGCAGAAGTGGCATCCAGAGAACTGATAAAAGAAGCTTATGCACGGGGAAGCTCTGATAACATCACTAGTGTTGTTGTTCGATTTGATATATCCTGA 1212 0.4563 MEFLKHETRTVFHANATNGSRSTLNLSALITTLPEDGDGKMISNSDPVEPLTTAAATSAVAVTASSSAEGQPAPPATPNIVMSSKDHDSLFSGGGIRFSYGYSSFKGKRSSMEDFFETTISEVDGQMVAFFGVFDGSSYCLTSVPVSVALLMFGGCTSPFAVFSSLRHTLTLLVFRPGCTAPVDILYWDDDCHGGSRTAEYLKNNLFKNLSSHPDFIKDTKTAIVEAFKQTDIDYLNEEKGHQRDAGSTASTAMLLGDRIVVANVGDSRVVASRAGSAIPLSIDHKPDRSDERQRIEKAGGFIIWAGTWRVGGVLAVSRAFGDKLLKPYVVADPEIQEEEIDGVDFIIIASDGLWNVISNNEAVSLVQNITDAEVASRELIKEAYARGSSDNITSVVVRFDIS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00078 403 SUPERFAMILY PP2C-like 93 186 IPR036457 -
Vimu2g00078 403 CDD PP2Cc 98 400 IPR001932 -
Vimu2g00078 403 Gene3D - 191 402 IPR036457 -
Vimu2g00078 403 Pfam Protein phosphatase 2C 191 393 IPR001932 -
Vimu2g00078 403 PANTHER PROTEIN PHOSPHATASE 79 400 IPR015655 GO:0004722|GO:0006470
Vimu2g00078 403 SMART PP2C_4 89 398 IPR001932 -
Vimu2g00078 403 SUPERFAMILY PP2C-like 192 401 IPR036457 -
Vimu2g00078 403 ProSiteProfiles PPM-type phosphatase domain profile. 99 400 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00078 Vimu-Chr2 444234 450024 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00078 80 403 PP2C-type Phosphatase Gene Family AT1G43900 59.159 4.52e-134 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00078 K17506 - gmx:100776867 499.975