Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00073 ATGGCGGGGATTCAGATGCTACCGTACGGCGACGTCGATTCCAATTTGAGGGCTATGGCCGGGTGCGCGGAGGGTTTTGGCCGCCACGCCATCGGCGGCCTCCATGGTTCTCTGTATATCGTCACCAATCTCGCAGGCACAGTAACCGATGCTCCTTTTTTCTGCAATGATGGTCCTGGGTCCCTTCGCGAAGGATGTCGTAGAAATGAACCTTTGTGGATTGTTTTCGAGGTTTCTGGTACGATTCATCTGTCGTCGTACCTGAGTGTGTCGTCGTATAAGACAATAGATGGGAGAGGGCATAGGGTGAAATTGACTGGGAAAGGTCTGAGGCTGAAGGAATGTGAGCACATCATCGTGTGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTTGATGGCATTCAAATCAAACCAAATTCTAGGCATATATGGATCGATCGATGCACCCTTCGTGATTACGACGATGGCCTCATAGACATCACAAGACAAAGCACCGATATCACTGTATCCAGGTGTTACTTTGGGCAGCATGACAAGACCATGCTCATTGGGGCTGACCCGACTCACGTTGGTGATAGATGCATCCGGGTGACCATTCACCACTGTTTCTTTGATGGAACGCGGCAAAGACAACCACGTGTGAGATTTGGAAAAGTTCATCTGTACAATAATTACACCAGAAACTGGGGGGTTTATGCTGTTTGCGCTAGTGTGGAATCCCAGGCGGCAGATAAGGAAGAGCAAAAGTCGGGCATCATAGTATCAGAAGGAGACATGCTTTTGAATGGTGCACAGCCATGCTTGCTTACACAAAACAGAGAGGTGGCCATGTTCCATCCTAGCGAATATTACCCGACATGGACGATGGAAACAGCTGCGCATTCTCTTAGAGAGATCCTCCTATTGTGTACAGGTTTTGGACAAACTTTTTCACAAGATTTTGTAGGAGGAAAAAAGATTCCAGCTTCTGATGCAAACTAA 987 0.4813 MAGIQMLPYGDVDSNLRAMAGCAEGFGRHAIGGLHGSLYIVTNLAGTVTDAPFFCNDGPGSLREGCRRNEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGHRVKLTGKGLRLKECEHIIVCNLEFEGGRGHDVDGIQIKPNSRHIWIDRCTLRDYDDGLIDITRQSTDITVSRCYFGQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGVYAVCASVESQAADKEEQKSGIIVSEGDMLLNGAQPCLLTQNREVAMFHPSEYYPTWTMETAAHSLREILLLCTGFGQTFSQDFVGGKKIPASDAN 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00073 328 SMART amb_all 79 268 IPR002022 -
Vimu2g00073 328 Pfam Pectate lyase 88 233 IPR002022 -
Vimu2g00073 328 Gene3D - 9 300 IPR012334 -
Vimu2g00073 328 PANTHER PECTATE LYASE 18-RELATED 11 243 IPR045032 GO:0030570
Vimu2g00073 328 PRINTS Pollen allergen Amb family signature 22 39 IPR018082 -
Vimu2g00073 328 PRINTS Pollen allergen Amb family signature 212 231 IPR018082 -
Vimu2g00073 328 SUPERFAMILY Pectin lyase-like 20 268 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00073 Vimu-Chr2 397284 401102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00073 53 314 Polysaccharide Lyase AT3G55140 72.281 5.34e-155 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00073 K01728 - gmx:100802068 549.666