Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00055 ATGCACAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGGAATATTTACACTGTTGTTGCATTTTGTGCTGGTAATAAGGTGATGGAACTCTACCAGTTACAGTTAAATAAAATATTTAAGCAAAGCTTTCTTCATGGAGTGGCCATTGGTTTTGCATTTGGCTTTTCACAGTTTCTGCTCTTTGCATGTAATGCCCTTCTACTTTGGTACACTGCAATGTGTGTAAATAAGGGATATGTGGGTACACCAACTGCTCTCAAGGAGTACATGGTTTTCTCATTTGCTACATTTGCCCTTGTGGAGCCTTTTGGGTTGGCTCCTTACATACTTAAGCGACGTAAATCTCTCATATCAGTGTTTGAAATTATAGATCGTGTGCCTAAGATTGATCCTGATGATAACAAAGCAATGAAGCCACCCAATGTATATGGGAGCATTGAGTTGAAAAATGTTGATTTTTGTTATCCTTCCCGGCCAGAAGTGTTGGTCTTAAGCAATTTTAGCCTCAAAGTCAATGGAGGGCAAACAATTGCTGTAGTGGGAGTTTCGGGGTCAGGGAAGAGCACAATAATATCTTTGATCGAGAGATTCTATGATCCAGTTTCTGGCCAAGTTTTGCTAGATGGGAGGGATTTAAAGCAATATAATTTGAGATGGTTGAGGAGCCACCTTGGTCTGGTTCAGCAGGAACCGATTATCTTCTCAACAACCATAAGGGAAAACATCATATATGCCAGGCATAATGCCAGTGAAGCTGAAATAAAGGAGGCTGCAAGAATAGCAAATGCTCATCACTTCATCAGTAGCTTGCCTCATGGTTATGACACTCATGTTGGGATGAGAGGTGTTGATTTAACCCCTGGACAAAAACAGAGAATTGCAATTGCAAGGGTAATTCTTAAAAATGCTCCTATTTTGTTGCTGGATGAAGCTAGTTCATCAATTGAATCTGAGTCAAGCCGAGTGGTGCAAGAGGCTCTAGACACCCTAGTAATGGGAAACAAAACCACTATTTTAATAGCACACAGAGCTGCAATGATGAGGCACGTGGACAACATAGTAGTTCTAAATGGAGGAAGGATAGTGGAGGAGGGGACCCATGATTCATTGGTGGCAAAAAATGGTCTGTATGTCCGATTGATGCAACCTCATTTTGGTGGAGGCTTGCATGTAGCAATAACGGGAGTATGGGATCAGCACTCAGGCATTGATAGACATAGGAAGAGGGTGCTGTGGCAGGGATAG 1248 0.4183 MHRKASLVLEDAVRNIYTVVAFCAGNKVMELYQLQLNKIFKQSFLHGVAIGFAFGFSQFLLFACNALLLWYTAMCVNKGYVGTPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDNKAMKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTIAVVGVSGSGKSTIISLIERFYDPVSGQVLLDGRDLKQYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEIKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVILKNAPILLLDEASSSIESESSRVVQEALDTLVMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLVAKNGLYVRLMQPHFGGGLHVAITGVWDQHSGIDRHRKRVLWQG 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00055 415 FunFam ABC transporter B family member 6 1 144 - -
Vimu2g00055 415 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 147 384 IPR003439 GO:0005524
Vimu2g00055 415 SMART AAA_5 174 361 IPR003593 GO:0016887
Vimu2g00055 415 FunFam ABC transporter B family member 20 137 386 - -
Vimu2g00055 415 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 116 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu2g00055 415 Pfam ABC transporter 165 313 IPR003439 GO:0005524
Vimu2g00055 415 SUPERFAMILY ABC transporter transmembrane region 5 132 IPR036640 GO:0005524|GO:0016020
Vimu2g00055 415 Pfam ABC transporter transmembrane region 4 80 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu2g00055 415 Gene3D ABC transporter type 1, transmembrane domain 3 136 IPR036640 GO:0005524|GO:0016020
Vimu2g00055 415 PANTHER ABC TRANSPORTER B FAMILY 3 384 IPR039421 -
Vimu2g00055 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 383 IPR027417 -
Vimu2g00055 415 Gene3D - 137 384 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00055 Vimu-Chr2 301531 302928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00055 2 383 Calmodulin-binding Proteins AT2G36910 43.896 3.34e-109 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00055 K05658 - gmx:100799399 732.635