Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00053 ATGGAGGATTTCTTCAGCAATTTGCCAGATGAAGTTCTAAGGTCCATAGTTTCTTTTCTGCCAAAGGAATCAACGCTACAAACCAGCCTCATATCTACCAGGTGGAGAGACTTGTGGAACCAAGTTCTTGTCAGACATGGAACCACACAAGATGTAGCTGCTGCTGTTGCTCAATTTCTAGCTCGTTTTGAAGACCATGATCCTCTAAAACATCCACGCAAGCTTCAATTTCACTTTGCTCAACACACTGCACTCTTTGCATCCATTGCAGCTGACAACAAGCTTCTTCTTGATTTCCCTGGTGAGAACAAACACCTTGAGAGGAACTATGAACTTCAGTTCATCCTCACCAAGGATCACATCACACACCACACTTTTCACCCCACTTTCATTGTCAAAACTCTCTATTTGAAAGCGGTGAGTCACTTGGCAAGTTCGGTGGCTTCCTCCATCGTTTCAACATTGGAGCAGCTTGAGAAGTTGGTGATTGTTGAGTGCATTGGCTTGCAGTCTTTATGCATTGAGTCTGAATCAAAGCTTCAGAAATTAACCGTATTAGACTGCCCCCAGTTGAAGTTTCTCCATCTTAGAACTTCTAAGCTTAAAAATTTAACATACAGCGGACCTCTTCCAAGGATTTGGCCAGAATCTCATTTCAACCTGAGCCATGCCATGCTTGATTTCAGACAAGGACCAAGCTGTTCTGATTTTAAGGCTCAAGATTTCAATCAGACTCTGTTAACAATAAAGAATTGTGAAACTCTAACTCTGTGTGAGTGGACTTTTGAGACATTGATATGGCCATCGATTTCTCCAACTGGGAACTTCATATTCTATAACATACGTGAGCTATGGTGGATTCACAATCATAAGGCTGAAAACAGCATGGATGTCTTGGTCTCCTTTTTGAAATTATGCCCTGCCTTGGAGCAACTTTTTGTAACGGATCAACCAAGTAACTCGTGGGCTTTCCGAAGCCCACAAGAAGAAAAACCCTTTTCAATATACCCTCCGAGTTTACGGCGTCGTTTGCTGCGTCTTCCCCAAAACCCTTTTGTTCCCATAACCGGGGCTGGGAAAATGGTTCTATCAAACAAGAAACTGAAGCTTAAGCTCAGAGCTGAATTGGCCCAACAACAGAATAATATCAGCGAAGTTCCTTCATCTTCGAACTCTCTCAAATCTCTTTTGGACGCTGCCACCCCCACACCCAGATTGTCCAAGCGCGACAAACACCGAAAGCTTCGATCTTCCGAACACCCTCCAAAAGAAGCCAACAAGGAAACTGAAACCGAAACAGAGGGTTCAGCCAATAAGAAAAACAAGAAGAGAAAGAGGAAGGTAGAGGGCGATGACGTGGCAAACGGAGCTCCCGACAACACACCACAGAAAAACAGCAAGAAGAAGAAGAAGCTGAAGAAGAACAAGAAAAAACCCAAAACCGCGGAGGACAATGGTTCTAATGGTGGAGGGGAAGTGCCTGAGGCTACAGAGTTAACCAAGACCAATACAGCTACCAGTCAAGACAATGGTGATGTTCCTACAAAGGTTTATGTTGGAGGAATTCCTTATTATTCAACCGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATAACTGAAGTTGATTGCATGTATTTTCCTGAAAGTGGCAAGTTTAGAGGGATTGCCATTATTAGTTTTAAGACCGAAGCAGCAGCTAAACGGGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAGCAACTCGAGCCAATAAAACATCGGATTTTGCTCCAGAAATTTTGGAGGGGTACAACAGAGTATATGTTGGGAATTTGTCATGGGATATAACAGAGGAAGAACTGAGGAAATTCTTCAATAATTGTGAGATAACGTCTATACGATTTGGTATGGATAAGGAGACGGGAGAGTTTCGAGGGTATGCTCATGTGGATTTTGGTGACAGTCAGTCACTGAAAACAGCACTTACATTGGACCAAAATGTTTTGTTTGGGAGACCTGTCAGGATAAGTTGTGCGGTTCCTCTGATTAAAAAACCAGGAACTCGTAAAAGCTCGACAGTTGATGAAGCTAATGGTGATAAATCAACTTCCTCAGGAAGTGGCAAGATGAATGGAGCTGATGGTGATAAATCAAGTTCCACAGTAAGTGGCAAGATGAAGAGAAGAACGTGCTATGAATGTGGTGAGAAAGGACATGGATTTTTGGAATGTCCTAAGAAACAAACAGGTGCTGCAACTACAACCTAA 2283 0.4279 MEDFFSNLPDEVLRSIVSFLPKESTLQTSLISTRWRDLWNQVLVRHGTTQDVAAAVAQFLARFEDHDPLKHPRKLQFHFAQHTALFASIAADNKLLLDFPGENKHLERNYELQFILTKDHITHHTFHPTFIVKTLYLKAVSHLASSVASSIVSTLEQLEKLVIVECIGLQSLCIESESKLQKLTVLDCPQLKFLHLRTSKLKNLTYSGPLPRIWPESHFNLSHAMLDFRQGPSCSDFKAQDFNQTLLTIKNCETLTLCEWTFETLIWPSISPTGNFIFYNIRELWWIHNHKAENSMDVLVSFLKLCPALEQLFVTDQPSNSWAFRSPQEEKPFSIYPPSLRRRLLRLPQNPFVPITGAGKMVLSNKKLKLKLRAELAQQQNNISEVPSSSNSLKSLLDAATPTPRLSKRDKHRKLRSSEHPPKEANKETETETEGSANKKNKKRKRKVEGDDVANGAPDNTPQKNSKKKKKLKKNKKKPKTAEDNGSNGGGEVPEATELTKTNTATSQDNGDVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMYFPESGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKATRANKTSDFAPEILEGYNRVYVGNLSWDITEEELRKFFNNCEITSIRFGMDKETGEFRGYAHVDFGDSQSLKTALTLDQNVLFGRPVRISCAVPLIKKPGTRKSSTVDEANGDKSTSSGSGKMNGADGDKSSSTVSGKMKRRTCYECGEKGHGFLECPKKQTGAATTT 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00053 760 CDD F-box_AtFBL13-like 5 39 - -
Vimu2g00053 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 515 592 IPR000504 GO:0003723
Vimu2g00053 760 CDD RRM1_PHIP1 517 588 IPR034361 -
Vimu2g00053 760 Gene3D - 1 72 - -
Vimu2g00053 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 612 679 IPR000504 GO:0003723
Vimu2g00053 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 517 583 IPR000504 GO:0003723
Vimu2g00053 760 SUPERFAMILY Retrovirus zinc finger-like domains 728 755 IPR036875 GO:0003676|GO:0008270
Vimu2g00053 760 MobiDBLite consensus disorder prediction 381 398 - -
Vimu2g00053 760 MobiDBLite consensus disorder prediction 702 728 - -
Vimu2g00053 760 SMART rrm1_1 611 682 IPR000504 GO:0003723
Vimu2g00053 760 SMART rrm1_1 516 588 IPR000504 GO:0003723
Vimu2g00053 760 ProSiteProfiles Zinc finger CCHC-type profile. 736 751 IPR001878 GO:0003676|GO:0008270
Vimu2g00053 760 MobiDBLite consensus disorder prediction 693 728 - -
Vimu2g00053 760 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 419 591 - -
Vimu2g00053 760 SMART fbox_2 8 48 IPR001810 GO:0005515
Vimu2g00053 760 MobiDBLite consensus disorder prediction 381 496 - -
Vimu2g00053 760 MobiDBLite consensus disorder prediction 417 453 - -
Vimu2g00053 760 Gene3D - 707 760 - -
Vimu2g00053 760 Gene3D - 405 601 IPR012677 -
Vimu2g00053 760 Gene3D - 606 690 IPR012677 -
Vimu2g00053 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 610 686 IPR000504 GO:0003723
Vimu2g00053 760 SUPERFAMILY RNA-binding domain, RBD 505 595 IPR035979 GO:0003676
Vimu2g00053 760 SUPERFAMILY RNA-binding domain, RBD 603 694 IPR035979 GO:0003676
Vimu2g00053 760 Pfam F-box domain 5 40 IPR001810 GO:0005515
Vimu2g00053 760 ProSiteProfiles F-box domain profile. 2 38 IPR001810 GO:0005515
Vimu2g00053 760 SUPERFAMILY F-box domain 3 40 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00053 Vimu-Chr2 293027 296808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00053 515 684 Eukaryotic Initiation Factors Gene Family AT2G36660 26.519 1.35e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00053 - - gmx:100817668 588.571