Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00049 ATGATGAAGAGAGAAAGAGAAGTTGATAGCGTAACCATGGCCAACTACTTGATGTTGCTTTCTGCAGGAGGTGAATTTGAGAACACAAACTACTTGAACTACTCTTCCAACCACCGTGTGTTTGAGTGCAAGACGTGTAAGAGGCAGTTTCCGTCGTTTCAAGCCTTGGGAGGGCACCGTGCGAGTCACAAGAAACCTAGGTTGATGATGGGAGAGAGTGAGCATAGCCAAGTTCTTCATGGTTCACCACCAAAACCTAAGACTCACGAGTGTTCTGTCTGTGGTTTGGAGTTTGCAATAGGCCAAGCTTTGGGAGGACACATGAGACGCCATAGAACATCATCAAATGGAAACATGAACAATGCTACTGCTACCACTGTTCATAATACTTCTTCACCAAAACTGAACCACAAGGGTAGCAGCAACGAGAGAGTTCTGTTCCCTGATCTGAATTTGACGCCATTAGAGAATGATTTGAAGTTTTTGAAGATCAGACAACCAGCTCCTTTGGTTCACTGCTTCAATTGA 528 0.4451 MMKREREVDSVTMANYLMLLSAGGEFENTNYLNYSSNHRVFECKTCKRQFPSFQALGGHRASHKKPRLMMGESEHSQVLHGSPPKPKTHECSVCGLEFAIGQALGGHMRRHRTSSNGNMNNATATTVHNTSSPKLNHKGSSNERVLFPDLNLTPLENDLKFLKIRQPAPLVHCFN 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00049 175 MobiDBLite consensus disorder prediction 108 142 - -
Vimu2g00049 175 SMART c2h2final6 89 111 IPR013087 -
Vimu2g00049 175 SMART c2h2final6 41 63 IPR013087 -
Vimu2g00049 175 Pfam C2H2-type zinc finger 40 66 - -
Vimu2g00049 175 Pfam C2H2-type zinc finger 89 113 - -
Vimu2g00049 175 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Vimu2g00049 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Vimu2g00049 175 MobiDBLite consensus disorder prediction 109 139 - -
Vimu2g00049 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Vimu2g00049 175 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Vimu2g00049 175 Gene3D Classic Zinc Finger 38 111 - -
Vimu2g00049 175 PANTHER ZINC FINGER PROTEIN ZAT5 6 158 - -
Vimu2g00049 175 SUPERFAMILY beta-beta-alpha zinc fingers 39 111 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00049 Vimu-Chr2 273319 273846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00049 2 162 C2H2 Transcription Factor Family AT2G37430 42.857 3.60e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu2g00049 zf-C2H2_6 9.2e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00049 - - gmx:100500316 231.491