LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu2g00046	ATGACATCTGGTGGACACAAAATAACATCAAGACAAAGGTGGACACCTACACCTGTGCAGCTTCAGATTCTTGAACGTATATTTGATCAGGGAAATGGAACTCCAAGCAAGGAAAAAATCAAAGAGATAACTGCTGAGCTGGGCCAGCATGGTCAAATTTCTGAAACAAATGTGTACAACTGGTTTCAGAATAGGCGTGCTCGATCCAAAAGAAAGCTGCAAAACGTGGCTCCTAGCAACACAGAATCAGAAGTGGACACTGAGGTTGATTCTAAGGATAAGAAGACAAAACCCGAGGAGTTTCTGTCTCAACATAACATAACAACTTCTGGAGGATCCGAAAAGCTGTGCTTTCAGAACCCTCAGGTGTACTCTGATTTGCAATACTTGAATCCTGATTCCAACAAGCCGTATTCCATGTTCCCATCAGATGGCAGTTTGAAATCCACAAGAAATTTGACTCACGTGTCTGTTTTTAACCAGGTGCTGTCAAATTCAAGTATGTAA	507	0.4181	MTSGGHKITSRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEITAELGQHGQISETNVYNWFQNRRARSKRKLQNVAPSNTESEVDTEVDSKDKKTKPEEFLSQHNITTSGGSEKLCFQNPQVYSDLQYLNPDSNKPYSMFPSDGSLKSTRNLTHVSVFNQVLSNSSM	168

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu2g00046	168	MobiDBLite	consensus disorder prediction	69	106	-	-
	Vimu2g00046	168	PANTHER	WUSCHEL-RELATED HOMEOBOX 13	1	165	IPR044559	GO:0003700
	Vimu2g00046	168	MobiDBLite	consensus disorder prediction	85	101	-	-
	Vimu2g00046	168	Pfam	Homeodomain	11	71	IPR001356	GO:0003677
	Vimu2g00046	168	SUPERFAMILY	Homeodomain-like	9	73	IPR009057	-
	Vimu2g00046	168	CDD	homeodomain	11	72	IPR001356	GO:0003677
	Vimu2g00046	168	ProSiteProfiles	'Homeobox' domain profile.	7	72	IPR001356	GO:0003677
	Vimu2g00046	168	SMART	HOX_1	9	76	IPR001356	GO:0003677
	Vimu2g00046	168	Gene3D	-	12	77	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu2g00046	Vimu-Chr2	252584	253090	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu2g00046	1	135	Wox Gene Family	AT4G35550	55.556	2.30e-46	150

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-WOX	Vimu2g00046		Homeodomain	3e-19	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu2g00046	-		-	gmx:100817342	304.679