Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00041 ATGCAGTTCAAGAGAAGCATCATGGTGTTGTTCTCTTGTGAGACCAAAGGTGTGGCCAAAGACATAGAGTTTCAGGAAACTCCTTCTCTACCTGTGGCAAGGTACCACGATTTAAAGGGCCATAGCTGTGATGCAGAGAGAGAGGAAATTTGCTCTATTTGCTTGGTGGAATATGAAGGAGAAGATGCAGTAAGCAAATTGGGAATGTGTGGCCATGTGTTTCATCTCAGTTGCATTGAACAATGGATACTTCGCAATCAATTCTCTTGTCCACTCTGTAGATCTTTTTTATTTTCTCATGTACATTCCCAGAATTAG 318 0.4151 MQFKRSIMVLFSCETKGVAKDIEFQETPSLPVARYHDLKGHSCDAEREEICSICLVEYEGEDAVSKLGMCGHVFHLSCIEQWILRNQFSCPLCRSFLFSHVHSQN 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00041 105 Pfam Ring finger domain 50 94 IPR001841 -
Vimu2g00041 105 SUPERFAMILY RING/U-box 42 100 - -
Vimu2g00041 105 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 101 IPR013083 -
Vimu2g00041 105 ProSiteProfiles Zinc finger RING-type profile. 51 94 IPR001841 -
Vimu2g00041 105 PANTHER RING ZINC FINGER PROTEIN-RELATED 23 97 - -
Vimu2g00041 105 SMART ring_2 51 93 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00041 44 99 C3H Transcription Factor Family AT4G38140 56.897 2.31e-19 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00041 - - pvu:PHAVU_007G012000g 172.94