Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00040 ATGGAAGAGATGTCGGGTTCAGCAACGGCAATAAATTCTTCCAATATTGGATTTCAGCTATTGAAGAAACAAGGTTGGAAAGAAGGGACTGGTCTTGGAGTATCTGAGCAGGGTAGATTAGAACCTGTGGAAACTTATGTAAAGAATAATAAACGAGGTTTGGGAGCAGATAAAGTGAAGAAAAAGGCCGTGAAGGTGAAACCGGATCATAGTGATTCCTCTAAAGGGACTAGTCAACAGGACGATTTACCTAAAAAGAAAAGCAAAACATTGTCTAAACGGATGAGAAAGATGCAGGAGTTGGAGAAGAAAATGCAAGAGAAGGAGTTTGAACGAGTTTTTTTCAGAGAGTTCTGGCCAGAAAATGTATAA 372 0.3952 MEEMSGSATAINSSNIGFQLLKKQGWKEGTGLGVSEQGRLEPVETYVKNNKRGLGADKVKKKAVKVKPDHSDSSKGTSQQDDLPKKKSKTLSKRMRKMQELEKKMQEKEFERVFFREFWPENV 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00040 123 Coils Coil 88 111 - -
Vimu2g00040 123 ProSiteProfiles G-patch domain profile. 13 59 IPR000467 GO:0003676
Vimu2g00040 123 PANTHER BAT4 PROTEIN-RELATED 3 123 IPR039146 -
Vimu2g00040 123 MobiDBLite consensus disorder prediction 51 102 - -
Vimu2g00040 123 MobiDBLite consensus disorder prediction 31 102 - -
Vimu2g00040 123 SMART G-patch_5 11 57 IPR000467 GO:0003676
Vimu2g00040 123 Pfam G-patch domain 14 56 IPR000467 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00040 11 55 C2H2 Transcription Factor Family AT5G26610 53.333 4.76e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00040 - - gmx:100812494 189.504