Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu2g00037 | ATGGATTTGGACCAGTGGATCTTGAAGGTTAAAGATGGCCAACATCTTCTTGAAGACGAGCTTCAACTTCTCTGCGAATATGTAAAAGAGATCCTTATTGAGGAGTCCAATGTGCAGCCTGTCAATAGTCCGGTAACTGTTTGTGGTGATATTCATGGTCAATTCCATGATCTGATGAAACTTTTCCAAACTGGGGGTCATGTGCCCGAGACAAATTATATTTTTATGGGAGACTTTGTTGATCGAGGTTACAATAGTCTTGAGGTTTTCACAATCCTTTTACTTCTAAAAGCTAGATACCCAGCTAACATTACTCTTTTACGTGGAAATCATGAAAGTAGACAATTAACCCAGGTCTACGGATTTTATGATGAATGTCAGAGGAAGTACGGCAATGCCAATGCATGGCGGTATTGTACAGATGTGTTTGACTATCTAACACTTTCTGCAATTATTGATGGAACTGTGCTTTGTGTTCATGGTGGCCTTTCTCCTGACATCCGCTCAATTGATCAGATAAGGGTCATTGATCGGAACTGTGAAATTCCTCACGAGGGTCCTTTCTGTGATCTAATGTGGAGTGATCCTGAAGATATTGAAACATGGGCAGTCAGTCCCCGTGGTGCAGGTTGGCTATTTGGATCTAGGGTCACGTCTGAGTTCAATCACATAAATAATCTTGATCTTGTTTGTCGAGCACATCAACTTGTTCAAGAAGGCCTCAAGTATATGTTCCAAGATAAAGGCCTTGTAACTGTATGGTCTGCACCTAATTACTGTTACCGATGTGGAAATGTAGCTTCTATTCTGAGTTTCAATGAAAATATGGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAAAACAATCAGATGAGAGGGCCCAGGACAGGCGTTCCATATTTCTTATAA | 912 | 0.4046 | MDLDQWILKVKDGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRSIDQIRVIDRNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQMRGPRTGVPYFL | 303 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu2g00037 | 303 | CDD | MPP_PP2A_PP4_PP6 | 2 | 285 | - | - | |
| Vimu2g00037 | 303 | SMART | pp2a_7 | 16 | 287 | IPR006186 | GO:0016787 | |
| Vimu2g00037 | 303 | PRINTS | Serine/threonine phosphatase family signature | 249 | 265 | IPR006186 | GO:0016787 | |
| Vimu2g00037 | 303 | PRINTS | Serine/threonine phosphatase family signature | 73 | 100 | IPR006186 | GO:0016787 | |
| Vimu2g00037 | 303 | PRINTS | Serine/threonine phosphatase family signature | 226 | 246 | IPR006186 | GO:0016787 | |
| Vimu2g00037 | 303 | PRINTS | Serine/threonine phosphatase family signature | 141 | 167 | IPR006186 | GO:0016787 | |
| Vimu2g00037 | 303 | PRINTS | Serine/threonine phosphatase family signature | 106 | 130 | IPR006186 | GO:0016787 | |
| Vimu2g00037 | 303 | PRINTS | Serine/threonine phosphatase family signature | 170 | 197 | IPR006186 | GO:0016787 | |
| Vimu2g00037 | 303 | PRINTS | Serine/threonine phosphatase family signature | 44 | 71 | IPR006186 | GO:0016787 | |
| Vimu2g00037 | 303 | PANTHER | SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED | 2 | 303 | IPR047129 | GO:0004722 | |
| Vimu2g00037 | 303 | FunFam | Serine/threonine-protein phosphatase | 1 | 303 | - | - | |
| Vimu2g00037 | 303 | ProSitePatterns | Serine/threonine specific protein phosphatases signature. | 107 | 112 | IPR006186 | GO:0016787 | |
| Vimu2g00037 | 303 | SUPERFAMILY | Metallo-dependent phosphatases | 2 | 286 | IPR029052 | - | |
| Vimu2g00037 | 303 | Gene3D | - | 1 | 303 | IPR029052 | - | |
| Vimu2g00037 | 303 | Pfam | Calcineurin-like phosphoesterase | 44 | 235 | IPR004843 | GO:0016787 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu2g00037 | Vimu-Chr2 | 203817 | 210141 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu2g00037 | 43 | 221 | Calmodulin-binding Proteins | AT5G63870 | 37.037 | 1.05e-28 | 110 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu2g00037 | K15498 | - | gmx:100811943 | 635.95 |