Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00021 ATGTCGGAAGCACCACCGTCTCAGACACCGCCTCAAGCCGCTGACGCGCCTCCGCCGCCATACTGGTGCTATCACTGCGAGAAGCGCGTTTCCGTCGAAACGCCCGCCAATCTCCCCGACGTCGTCTGCGGAGAGTGCAAAAACGGCTTCGTCGAAACCATCCCCACGCCGTCGCGCTCGCGCAGTCCCTCCGCATCCTCCGATGACCCCTACTTTGGCTCGCAGTTTCTCCAGGTGCTTCGCCTCATCGCGCAATCTGCACGTGACGATGACGCGTCGCCGCCGCCGCCGCCGAGTCGTTCTCCGGAGAACGATTTCCTCAGGATCGAGCTGGGCGGCTGGGACAACGACGATGAGAACGAAATCGAGAACGATGACGATAACGGCGACGAGGAGTTCGAGGAGCATGAGGAGGCGGAGGATCGCTCCGGCAACGAGGATCCGCACGGAGACGAGGAGGATCTGAGAAGGAGAAGGCGCGAGCTGCTTCGTCTTCGGATTAGGGATTTGGCGACGCGCACGAGGAGCATGCGGAACCGGATCTTGGATTGGGCAGAAATTCTGATGGGCCTGGAGGACAATTCCATTGAGTTCCGCCTCAGGGTGCCGGAATCCGACCGCTACGTCGGGAATCCGGAGGATTACGTCGACGCGGCGGAGTACGAGGCGTTGCTGCAGACGCTGGCGGAGACCGACGGCGGAGGCAGGAGAGGAGCGCCGCCGGCGTCGAAGTCGGCAGTGGAAGCCTTGCCGACGGTGAAGATTGCGTCGGAGAGTGAAACTGTGGTGTGCGCTGTATGTAAGGATTTGCTGGGTGTTGGAGAGGCGGCGAAGAGGTTACCGTGCGGGCATCAGTATCATGGAGATTGCATTGTTCCTTGGTTGAGCTCTAGAAATTCTTGCCCTGTTTGCAGGTTTGAGCTTCCAACGGATGATAGGGAATATGAGGAAGAGAGAGTGGTTAATGCTGCTTCTTCGAATTCGAACGGAGCTTCGAGTTCCGGTGGAGGTGGAAGGACCATTGTTTGA 1029 0.5938 MSEAPPSQTPPQAADAPPPPYWCYHCEKRVSVETPANLPDVVCGECKNGFVETIPTPSRSRSPSASSDDPYFGSQFLQVLRLIAQSARDDDASPPPPPSRSPENDFLRIELGGWDNDDENEIENDDDNGDEEFEEHEEAEDRSGNEDPHGDEEDLRRRRRELLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIEFRLRVPESDRYVGNPEDYVDAAEYEALLQTLAETDGGGRRGAPPASKSAVEALPTVKIASESETVVCAVCKDLLGVGEAAKRLPCGHQYHGDCIVPWLSSRNSCPVCRFELPTDDREYEEERVVNAASSNSNGASSSGGGGRTIV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00021 342 MobiDBLite consensus disorder prediction 116 141 - -
Vimu2g00021 342 SUPERFAMILY RING/U-box 259 311 - -
Vimu2g00021 342 MobiDBLite consensus disorder prediction 322 342 - -
Vimu2g00021 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 311 IPR013083 -
Vimu2g00021 342 ProSiteProfiles Zinc finger RING-type profile. 264 305 IPR001841 -
Vimu2g00021 342 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 126 309 - -
Vimu2g00021 342 MobiDBLite consensus disorder prediction 88 155 - -
Vimu2g00021 342 SMART ring_2 264 304 IPR001841 -
Vimu2g00021 342 MobiDBLite consensus disorder prediction 50 73 - -
Vimu2g00021 342 MobiDBLite consensus disorder prediction 53 73 - -
Vimu2g00021 342 Pfam zinc-ribbon 21 54 IPR039525 GO:0061630
Vimu2g00021 342 FunFam E3 ubiquitin-protein ligase RING1-like 227 311 - -
Vimu2g00021 342 Pfam Ring finger domain 264 305 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00021 Vimu-Chr2 102169 103197 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00021 175 317 C3H Transcription Factor Family AT5G01980 48.667 1.02e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00021 - - gmx:100780991 523.857