Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00015 ATGTCTCAGACATCCAGTGTCCTGCCTGCCTTCCACTCCATCAAGCCATTGCCCTCTGAGTTCAAGTTTGCCAACAATCCAAACCCTCTGCTTGTGGAAAAACATGGAGATGTTAAATTTAGACGCACCAATCCGATTGCACCAAATGGTTTTGAGAATGGTGCACTAGTAGGGGAGGTTTCTAAGGAAGTTCGAGGCCGAGCTGGTGGCATGGATCTTTTTGATGAGGATTCGCCGTATGGTGGAAAAGGTAGATCATTAAAAGACCGACCATCTAATGCAGATGAAGACTCCGCATCCGTTACTGTGCCCCTGCCATCAACTTTGACATCCTCTAGGGAAAACAGGTGGAATGATACAAATTCTTATGGTTCAAAAAAGAAGCTTCAGTCATGGCTTCAACTACCAAATGGGGATTGGGAGCTGGTAAATATAATAACAGCTTCCGGAGCTGAATCTGTCATTTCACTGCCGGATGGGAAAGTTTTAAAGGTGAAAGAGGATAATTTGGTTCCAGCTAATCCCGACATTCTTGATGGAGTGGATGACCTCATGCAACTTAGTTATTTAAATGAACCAGCAGTTTTATTCAACCTGCAATATAGATACAACCAAGATATGATCTATACGAAAGCTGGTCCCGTTTTGGTTGCTGTAAATCCCTTTAAGAAAGTTCCTTTGTATGGTAATGACTATATTGAAGCTTACAAGTGTAAGGCAATTGAAAGCCCTCATGTTTATGCAATTACCGACACAGCCATCCGAGAAATGATACGAGATGAAGTGAATCAATCCATAATTATAAGTGGTGAGAGTGGAGCTGGAAAGACTGAGACAGCAAAAATAGCAATGCAGTATTTGGCTGCCCTTGGTGGCGGCAGTGGAATAGAGAACGAGATATTAAAGACTAATCCAATACTAGAAGCCTTTGGTAATGGAAAAACATTAAGAAATGACAACTCGAGTCGTTTTGGAAAGCTCATTGAGATTCATTTCAGTGAAACTGGAAAAATATCTGGTGCAAATATTCAAACATTTTTGCTGGAAAAGTCCAGAGTAGTCCAATGCAATGAAGGGGAGAGGTCATATCATATATTTTATCAGTTATGTGCTGGAGCACCCTCATCTCTTAGGGAAAAGCTAAATCTACTAAGTGCGGAAGAATATAAATATCTGAGGCAGAGCAATTGTTATTCAATTAGCGGCATAGATGATGCTGAAGAATTTCGCATAGTCAAGGAAGCTCTGGATATTGTCCACATTAGCAAGGGAGACCAGGAGAATGTATTTGCAATGCTTGCTGCAGTATTATGGTTAGGAAACATATCATTTACTGTGGTCGATAATGAAAATCATGTTGAAGCTGTTGAGGATGAGGGTTTGTTCACCGTTGCCAAGTTGATTGGATGTGAAATTGAAGACCTGAAGTTGACTTTTTCAACTCGCAAAATGAAAGTTGGTAATGATAATATTGTCCAGAAGTTGACGCTCTCTCAGGCTATTGATGCGAGAGATGCTTTGGCGAAGTCAATATATGCATGTTTGTTTGATTGGTTGGTTGAGCAAATAAATAAATCCCTTGCAGTTGGCAAAAGACGAACTGGCAGATCAATCAGCATTCTTGATATTTATGGCTTTGAGTCATTCAATAGGAATAGTTTTGAGCAGTTTTGCATAAATTATGCAAATGAAAGATTACAGCAACATTTCAATCGTCATTTGTTCAAGCTGGAACAGGAGGAATATATCCAAGATGGCATTGATTGGGCTAAAGTGGAATTTGAAGACAACCAAGATTGCCTTAATCTGTTTGAAAAGAAACCATTGGGACTACTATCCCTGTTAGATGAAGAATCAACTTTCCCTAATGGCACGGATTTAACGTTTGCTAACAAGCTTAAGCAGCATTTGAATTCCAATTCTTGCTTCAAAGGAGAACGCGAAAAAGCCTTTACTGTGCGTCATTATGCAGGGGAGGTCACTTATGATACATCTGGATTCCTGGAAAAGAACAGGGACCTATTGCACTTAGATTCTATCCAACTTCTATCTTCAAGCAAATGCCATCTTCCTAAGTTATTTGCATCCCATATGCTTACTCAGTCTGAGAAGCCTGTTGTAGGTCCCTTACATAAGTCAGGGGGAGCAGATTCCCAAAAGCTAAGTGTCGCCACAAAATTCAAGGATCGTACTCATACTGACTCTACTATTGCGGTTTGTAAAAGTGAAAATGGAAGTAATGAGGGACAATTGTTCCAATTGATGCAACGTCTAGAGAGTACCACACCACATTTTATACGCTGCATTAAGCCCAATAACCTCCAATCACCTGGATCATATGAGCAAAGCCTTGTACTTCAGCAGTTGAGATGTTGTGGAGTTCTGGAAGTGGTTCGAATATCAAGATCGGGCTTTCCAACTAGAGTATCTCACCAAAAGTTTGCCAGAAGATATGGTTTTCTTCTCCTTGAAAACGTTGCCTCTCAGGATCCACTTAGTGTTTCAGTTGCTATCCTTCATCAGTTCAACATTTTGCCTGAGATGTTTCAAGTTGGCTACACAAAGCTATTCTTCCGAACAGGACAGATTGGCGTGCTTGAGGATACCAGAAATCGTACTCTGCATGGAATTTTACGTGTGCAAAGTTGCTTCAGGGGTCACCGAGCTCGTTGTTACCGCAAGGAACTTTGGAGAGGAATTACCATTCTCCAATCATTTATTAGAGGAGAGAAAAGCAGAAAGGAATACGCAAGTTTGCTTCACAGACATAAGGCTGCTGTTATTATACAGAAGCGGATGAAAACAGTATTTGCAAGGAACAGAATGAAAAGTATTAACGAAGCTGCGGTTGTCATACAATCATTTATCCGTGGTTGGTTAGTCAGAAGATGCTCTGGAAACATAGTGTTATCAAAATCTGGAGTCACGAAGAGTAATGAGTCAAATGAGGTTCTTGTGAAGTCGTCGTTCCTCGCTGAACTACAGCGCCGGGTACTTAAGGCAGAAGCTGCCCTGAGAGAGAAGGAAGAGGAAAATGACATTCTTCACCAACGCCTTCAACAGTATGAGAACAGATGGTCCGAATACGAGTTAAAGATGAAGTCCATGGAACAAGTATGGCAGAAGCAAATGAGATCCTTGCAATCTAGCCTCTCTATTGCAAAGAAGAGCCTTGCTCTGGATGAATCTGAAAGAAATTCAGATGCTTCTGTTAACGCAAGTGACGAGAAAGATTTCAGCTGGGATGTAGGAACCAATCACCGTCGTCAAGAAAGCAACGGGGCAAGATCAATGAGTGCTGGTTTGAGTGTTATAAGTCGGTTGGCTGAAGAATTTGAGCAGAGGAGTCAAGTATTTGGTGATGATGCCAAGTTCTTGGTAGAGGTAAAATCTGGTCAAGTTGAAGCAAGTTTGAACCCAGATAGAGAACTTAGAAGGTTAAAACAGATGTTTGAAGCTTGGAAAAAGGATTATGGTTCAAGACTACGTGAAACAAAGGTCATTTTACATAAACTTGGAAGTGAAGATGGATCAATTGAGAAAGTGAAGAAAAGTTGGTGGGGAAGAAGGAATAGTACCAGAATAAGTTGA 3591 0.4085 MSQTSSVLPAFHSIKPLPSEFKFANNPNPLLVEKHGDVKFRRTNPIAPNGFENGALVGEVSKEVRGRAGGMDLFDEDSPYGGKGRSLKDRPSNADEDSASVTVPLPSTLTSSRENRWNDTNSYGSKKKLQSWLQLPNGDWELVNIITASGAESVISLPDGKVLKVKEDNLVPANPDILDGVDDLMQLSYLNEPAVLFNLQYRYNQDMIYTKAGPVLVAVNPFKKVPLYGNDYIEAYKCKAIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIENEILKTNPILEAFGNGKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGAPSSLREKLNLLSAEEYKYLRQSNCYSISGIDDAEEFRIVKEALDIVHISKGDQENVFAMLAAVLWLGNISFTVVDNENHVEAVEDEGLFTVAKLIGCEIEDLKLTFSTRKMKVGNDNIVQKLTLSQAIDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFKGEREKAFTVRHYAGEVTYDTSGFLEKNRDLLHLDSIQLLSSSKCHLPKLFASHMLTQSEKPVVGPLHKSGGADSQKLSVATKFKDRTHTDSTIAVCKSENGSNEGQLFQLMQRLESTTPHFIRCIKPNNLQSPGSYEQSLVLQQLRCCGVLEVVRISRSGFPTRVSHQKFARRYGFLLLENVASQDPLSVSVAILHQFNILPEMFQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGHRARCYRKELWRGITILQSFIRGEKSRKEYASLLHRHKAAVIIQKRMKTVFARNRMKSINEAAVVIQSFIRGWLVRRCSGNIVLSKSGVTKSNESNEVLVKSSFLAELQRRVLKAEAALREKEEENDILHQRLQQYENRWSEYELKMKSMEQVWQKQMRSLQSSLSIAKKSLALDESERNSDASVNASDEKDFSWDVGTNHRRQESNGARSMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLNPDRELRRLKQMFEAWKKDYGSRLRETKVILHKLGSEDGSIEKVKKSWWGRRNSTRIS 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00015 1196 MobiDBLite consensus disorder prediction 69 95 - -
Vimu2g00015 1196 Coils Coil 991 1039 - -
Vimu2g00015 1196 Gene3D Kinesin motor domain 178 804 IPR036961 -
Vimu2g00015 1196 SMART MYSc_2a 173 872 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu2g00015 1196 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 126 175 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vimu2g00015 1196 MobiDBLite consensus disorder prediction 96 121 - -
Vimu2g00015 1196 FunFam Myosin heavy chain 361 417 - -
Vimu2g00015 1196 PRINTS Myosin heavy chain signature 537 565 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu2g00015 1196 PRINTS Myosin heavy chain signature 209 228 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu2g00015 1196 PRINTS Myosin heavy chain signature 590 618 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu2g00015 1196 PRINTS Myosin heavy chain signature 305 332 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu2g00015 1196 PRINTS Myosin heavy chain signature 263 288 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu2g00015 1196 Gene3D - 361 417 - -
Vimu2g00015 1196 ProSiteProfiles IQ motif profile. 945 974 IPR000048 GO:0005515
Vimu2g00015 1196 FunFam Unconventional myosin-XIX 549 761 - -
Vimu2g00015 1196 Gene3D - 924 966 - -
Vimu2g00015 1196 Gene3D - 875 923 - -
Vimu2g00015 1196 Pfam IQ calmodulin-binding motif 877 892 IPR000048 GO:0005515
Vimu2g00015 1196 Pfam IQ calmodulin-binding motif 899 916 IPR000048 GO:0005515
Vimu2g00015 1196 Pfam IQ calmodulin-binding motif 947 963 IPR000048 GO:0005515
Vimu2g00015 1196 PANTHER MYOSIN 172 1188 - -
Vimu2g00015 1196 Gene3D Myosin VI head, motor domain, U50 subdomain 418 526 - -
Vimu2g00015 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 919 IPR027417 -
Vimu2g00015 1196 CDD MYSc_Myo8 193 859 IPR036022 -
Vimu2g00015 1196 Gene3D - 549 761 - -
Vimu2g00015 1196 SMART iq_5 944 966 IPR000048 GO:0005515
Vimu2g00015 1196 SMART iq_5 921 943 IPR000048 GO:0005515
Vimu2g00015 1196 SMART iq_5 872 894 IPR000048 GO:0005515
Vimu2g00015 1196 SMART iq_5 895 917 IPR000048 GO:0005515
Vimu2g00015 1196 Pfam Myosin head (motor domain) 181 859 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu2g00015 1196 Gene3D - 805 869 - -
Vimu2g00015 1196 MobiDBLite consensus disorder prediction 69 121 - -
Vimu2g00015 1196 ProSiteProfiles IQ motif profile. 875 901 IPR000048 GO:0005515
Vimu2g00015 1196 ProSiteProfiles Myosin motor domain profile. 179 871 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu2g00015 1196 ProSiteProfiles IQ motif profile. 898 925 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00015 Vimu-Chr2 73058 83141 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00015 7 1194 Myosins gene family AT1G50360 74.727 0.0 1793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00015 - K10357 gmx:100801124 2173.67