Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00007 ATGTCAACCTCTGACGGCACCACTAACGGCGTCTCTAACGCCTCAATCATTGACCAGCAACGCCAGCAGCCCCAGGCGTTGGCCGTCAAGAAGCCACCGTCCAAGGACCGCCACAGCAAGGTCGACGGACGCGGCCGCCGCATACGAATGCCCATCATCTGCGCCGCCAGAGTCTTCCAGCTAACGCGGGAGCTGGGTCACAAGTCAGACGGCCAGACCATCGAGTGGCTCCTGCGCCAGGCCGAGCCTTCCATCATCGCCGCCACCGGCACAGGCACCACGCCTGCCAGCTTCTCTTCCGTCTCCCTCTCCGTACGCGCCGCCAACTCCGCGTCTCTCTCTTCGCCTTCCTCCACCTCCGACCACAAGCCGCAGCTCCTCGCTCCCACGCCCTTCATCCTCGGCAAGCGCATACGCACCGACGATGACACTTCCAAGGACGACGCCGTTTCCGTGGGCCCCTCCCTCGTGGGCCCCTCTACCCCGCCCGGACTGTGGGCCCTCCCTGCTCGCCCCGATTTCGGACAAATTTGGAGCTTCGCCGCCGCTCCAGAAATGGTCGTCCAGCCCGCTGCCGTGTCGGTGTCGCAACAGCAGGCGTCGCTCTTTGCTCATCACCAACGTCAGCAGCAGCAGGCCATCGGAGAAGCGTCGGCGGCTAGGGTGGGGAATTACCTTCCGGGACATCTGAATTTACTGGCTTCGTTGTCCGGCGGACCTGGGAATTCTGGTCGAAGGGATGGCGAGCATCGAAGGTGGATGGTGGAGGAAGGTGGTGGTGTTTTTTTGAAGAAAATTGCTGCTTCTGTTTCACTTGCGTTTTTGGTGGTGGTGGTTGCAGTTGAGGTAATTCTTAGTGCTTGGAAGCTTGTTTCTGAGATTGTTGGAGCATCCTACTTTACATTCCGACATGGGTTGAGAATGAGAATTCATGCCTCTTGGCTGGTCTCGGGGCATGTTTTGAGGTTAGTTTAA 975 0.5949 MSTSDGTTNGVSNASIIDQQRQQPQALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSLSVRAANSASLSSPSSTSDHKPQLLAPTPFILGKRIRTDDDTSKDDAVSVGPSLVGPSTPPGLWALPARPDFGQIWSFAAAPEMVVQPAAVSVSQQQASLFAHHQRQQQQAIGEASAARVGNYLPGHLNLLASLSGGPGNSGRRDGEHRRWMVEEGGGVFLKKIAASVSLAFLVVVVAVEVILSAWKLVSEIVGASYFTFRHGLRMRIHASWLVSGHVLRLV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00007 324 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 224 IPR005333 GO:0003700
Vimu2g00007 324 MobiDBLite consensus disorder prediction 1 47 - -
Vimu2g00007 324 MobiDBLite consensus disorder prediction 31 47 - -
Vimu2g00007 324 ProSiteProfiles TCP domain profile. 34 88 IPR017887 -
Vimu2g00007 324 Pfam TCP family transcription factor 34 124 IPR017887 -
Vimu2g00007 324 MobiDBLite consensus disorder prediction 1 27 - -
Vimu2g00007 324 MobiDBLite consensus disorder prediction 137 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00007 Vimu-Chr2 45404 46830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00007 12 251 TCP Transcription Factor Family AT5G23280 65.714 5.34e-96 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu2g00007 TCP 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00007 K16221 - gmx:100799005 404.445