Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00005 ATGGGCCCGCCCGGTTATATAGAAAGAGATCTTCATCAATCAGCTAGAGAGAGAGAGAAAATAACTAAACCAGAGAAGCCAAGAGGTTGTGTTGCGATTAACGACGACGAAGAAGACGACCAAATGATGTCTTCCGGCGGGGACAGTGGTAAGCCATTTTTTTGTCACGTGTGCAATCAGAGGATCACGTGCACCGATGAGTCGGAACCGTTCTGCCCGATCTGTCTGGAAGGTTTCGTGGAGGAATGGAACCCTAATAACCATAGTCATAACCCTAACCCTAATTTCACCCATGAGAGTGGGGGAGAATCTATGGATCCCGAATTCCCGTTCGATTTAATCGAGACCATGCTCCCTCTCTTGCTCAACGCGGGTTCCAGGACCCGCCGCGAAGCCGACATGTTCGACCCAAGGACGTACCTCCAGAACTACCTGCAGAACCTTCGCGCCGACGGCGCTGACATTCAATTCTCCTTCGGCCACTCTTCCGACGCGGGGTTCCGCCCCTCGTCAAACCTTGGCGACTACTATCTCGGCCCGGGCTTTGAGCAGTTGATTCAGCTGCTCGCCGACAACGACCCAAACCGTTACGGCACGCCACCGGCCGCAAAGGACGCCGTCGAGAATCTCCCCACAGTCACCGTCGACGACGAGTTGCTGAACTCGGAGATGAACCAATGCGCGGTCTGCCAGGACGAGTTCGAGAAGGGCACGCAGGTGACGCAGATGCCGTGCAAGCACGCGTATCATGCTGACTGCCTGATTCCTTGGCTTAAGCTGCATAACTCTTGCCCCGTTTGTCGGTATGAACTGCCCACCGATGACGCGGATTATGAGAATCGGACGCGGAGCAGTGGCGATGATGGTGGGTCGAGGTCTGATGTGAGCGATAGTGGCAGTGGCAGTGGCGGTGGCGCTGGAGGGGGAAATGGTAGACCTGTTCACCGGACTGTTAGAATATATTTGCGGCATCCTTTTGATGCAGGTGACTCTGCGCAGGACAGTTCCGAAAGGGGTTGGGAAAGTTGGGATTGA 1035 0.5488 MGPPGYIERDLHQSAREREKITKPEKPRGCVAINDDEEDDQMMSSGGDSGKPFFCHVCNQRITCTDESEPFCPICLEGFVEEWNPNNHSHNPNPNFTHESGGESMDPEFPFDLIETMLPLLLNAGSRTRREADMFDPRTYLQNYLQNLRADGADIQFSFGHSSDAGFRPSSNLGDYYLGPGFEQLIQLLADNDPNRYGTPPAAKDAVENLPTVTVDDELLNSEMNQCAVCQDEFEKGTQVTQMPCKHAYHADCLIPWLKLHNSCPVCRYELPTDDADYENRTRSSGDDGGSRSDVSDSGSGSGGGAGGGNGRPVHRTVRIYLRHPFDAGDSAQDSSERGWESWD 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00005 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 274 IPR013083 -
Vimu2g00005 344 SMART ring_2 227 267 IPR001841 -
Vimu2g00005 344 MobiDBLite consensus disorder prediction 276 344 - -
Vimu2g00005 344 MobiDBLite consensus disorder prediction 1 33 - -
Vimu2g00005 344 MobiDBLite consensus disorder prediction 276 290 - -
Vimu2g00005 344 SUPERFAMILY RING/U-box 206 274 - -
Vimu2g00005 344 MobiDBLite consensus disorder prediction 10 33 - -
Vimu2g00005 344 ProSiteProfiles Zinc finger RING-type profile. 227 268 IPR001841 -
Vimu2g00005 344 FunFam E3 ubiquitin-protein ligase RING1-like 188 274 - -
Vimu2g00005 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 134 272 - -
Vimu2g00005 344 Pfam Ring finger domain 225 268 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00005 Vimu-Chr2 31606 32640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00005 138 283 C3H Transcription Factor Family AT5G01980 41.497 6.50e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00005 K11982 - gmx:100785289 411.764