Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00001 ATGGAGAACGACACCGCCGCCGCCGCTAACAATAACACCGCCACTGCGAAAGTAGGTTCCGGAGGAGTGAAATCGAACAATCATAACCTAGAGGAAGAGCATTCCAATTTGAATGGCGAGGAGCACATGGCAGAGCAAGTGGAGGCGGAAGAGGAAGAAGATCGAGAAGCCGATGTAGGTGAAGGAGAACCAACTGGATCTGCGCCCAACCCTCGCCAACCTACGCGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTTGCTCTTGCTCGAACCCTCCAGGAGCAGGAAAGGGCATATATGATGCTGCGAATGAATAATGATGGAAGTGATTATGGTAGTTGGGAAGGTGAAAGCTATTTACATGATGATGGAGATGATTTTGATGATCTACATGATGGTACTGACGTGGATGAGGACGAGGACGATGATGACGAGGATGACGATGAAGATGATGATAATGAGGAGTATGAAGATGAAGATGCATTTGATGTCCATGCTAGTGCTGGAGAACATGATAATCCCATCATTGAATTTGACCCAGATGTTTATTCAAGCGATGAAGCATATGCTAGAGCATTACAGGAAGCTGAAGAGAGGGAGATGGCAGCTAGATTGTTGGCTCTTGCTGGGATAAATGATCGGGAGGTAGAGGAGGTAGAGGAACATGGTGCTAATTCTCAGGATGCTTGGGAGGACGTTGACCCAGATGAACTTTCATACGAGGAATTACTGGCATTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCCACCGATACTATTGCCGGTTTGCCTTCACTCAAATACAAGATTGGGAGTGATCAGCATGGAAGCAATGATTCGTGCGTCATTTGCCGGGTGGACTTTGAGGATGGTGAGTCTTTAACACATCTTTCCTGCAAACATCTGTACCATCCTGAGTGTATCAACAATTGGTTGAAAATAAACAAGCTATTAGTTTCCAATTTCAACAAGCAAGTTCTAATTTATGGTTCCATTAGTTTTTTGGCGCACACCTCTTTGCCTCTGGTTTGCCCAGTCTGTAGTACCGAGGTATCTGCTTCTGGGAGCAACTTGTAG 1092 0.4625 MENDTAAAANNNTATAKVGSGGVKSNNHNLEEEHSNLNGEEHMAEQVEAEEEEDREADVGEGEPTGSAPNPRQPTRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGESYLHDDGDDFDDLHDGTDVDEDEDDDDEDDDEDDDNEEYEDEDAFDVHASAGEHDNPIIEFDPDVYSSDEAYARALQEAEEREMAARLLALAGINDREVEEVEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIAGLPSLKYKIGSDQHGSNDSCVICRVDFEDGESLTHLSCKHLYHPECINNWLKINKLLVSNFNKQVLIYGSISFLAHTSLPLVCPVCSTEVSASGSNL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00001 363 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 31 361 IPR043312 -
Vimu2g00001 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 359 IPR013083 -
Vimu2g00001 363 MobiDBLite consensus disorder prediction 1 84 - -
Vimu2g00001 363 MobiDBLite consensus disorder prediction 45 59 - -
Vimu2g00001 363 SMART ring_2 286 352 IPR001841 -
Vimu2g00001 363 MobiDBLite consensus disorder prediction 27 44 - -
Vimu2g00001 363 ProSiteProfiles Zinc finger RING-type profile. 286 353 IPR001841 -
Vimu2g00001 363 MobiDBLite consensus disorder prediction 1 26 - -
Vimu2g00001 363 MobiDBLite consensus disorder prediction 108 162 - -
Vimu2g00001 363 Pfam Ring finger domain 284 320 IPR001841 -
Vimu2g00001 363 SUPERFAMILY RING/U-box 277 357 - -
Vimu2g00001 363 MobiDBLite consensus disorder prediction 68 84 - -
Vimu2g00001 363 MobiDBLite consensus disorder prediction 131 162 - -
Vimu2g00001 363 Coils Coil 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00001 Vimu-Chr2 5457 10716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00001 65 230 C3H Transcription Factor Family AT3G19910 45.946 4.04e-37 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00001 K19045 - gmx:100306465 462.611