Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03173 ATGGCTGATTTAGGCTCAGCCTCTTCCAGGAGAATGTGGTGTTCCATTCCTGAAAGAATGCAGCTGCATGTGGCCATGCTGGCCTTGCAGTTTGGCTATGCTGGTTTCCATGTAGTCTCAAGAGCTGCCCTTAACATGGGTGTCAGCAAGCTTGTTTTCCCAGTCTATCGTAACATCATTGCCTTGCTTCTACTCCTTCCCTTTGCCTACTTCTTGGAAAAGAAGGAGAGACCAGCTATCAGTTTAAACTTTGCCTGCCAGTTCTTTTTTCTGGCACTTGTTGGGATTACAGCAAACCAAGGTTTCTACTTGCTTGGGTTGGAGAACACATCTCCTACCTTCGCATCAGCAATACAGAACTCTGTCCCAGCCATTACATTCCTCATGGCAGCCATTTTCAGGCAAGCCCTTCTTTAA 417 0.4676 MADLGSASSRRMWCSIPERMQLHVAMLALQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIALLLLLPFAYFLEKKERPAISLNFACQFFFLALVGITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAAIFRQALL 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03173 138 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 133 - -
Vimu1g03173 138 Pfam EamA-like transporter family 26 133 IPR000620 GO:0016020
Vimu1g03173 138 PANTHER WAT1-RELATED PROTEIN 24 131 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03173 Vimu-Chr1 43900503 43901613 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03173 1 134 Nodulin-like Gene Family AT1G75500 81.343 4.75e-74 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03173 - - gmx:100792395 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03173 1 43900503 43901613 Vimu1g03173 1 43900503 43901613 ECH
Vimu1g03173 1 43900503 43901613 Vimu10g03442 10 44227835 44230465 PCT