Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03166 ATGGTTTCTTCTGCTGGAACTTTTGAAGCTGGATTCTTTCAGTTGGGAAATTCAGAAGATCAATACTTTTGTATATGGTACAAGAACATATCACCAAAGACTATTGTGTGGGTGGCCAACAGAGATGCCCCAGTGAAAAACTCAACAGCATTTTTCACACTAACAGAACAAGGAGTTCCTGTTATTCTTGATGCCTCAGGAAGTGTTGTGTGGACCTCCAATTCATCAAGAAACGCTAAGAAACCAGTTATGCAGCTTCTAGACTCGGGAAATCTTGTTGTGCAAGATGGAGACAGCACAAAAGACCTTTTGTGGGAAAGTTTTGATTACCCTGGTGACACTTTCCTTGCAGGAATGAAACTTCGTACAAACTTTGTGACTGGTCGTGTTAGGTTTCTCACATCTTGGAGAAACGCAGAAGATCCTGGCTTTGGTGAGTTTTCGTATCACATAGATGCTCATGGCTATCCTCAACTGGTTACTACAAAGGGAGAACTTTTGTTCAGTAGAGGAGGGCCATGGAACGGCAATGTTTTCAGTGGAGTTTCATGGAGAAGAACGCTTAGACTCCTAAAGTTTTCACTTGAGAGTAACGACAAGGAAATCATTTACCAATATAAGACCTTAGAGGCTGAAACTATTACTAGGTTAGTGATCAACCCATCTGGTCTTGTGCAACGTTTGTTATGGTCGGGTGGCAGCCGGGGTTGGGAGATTTTATCCACTCGTCCCATGGATCAGTGTGACTATTATTCCTTTTGTGATGTGAATTCACTGTGTAATGTTACTAACTCTCCAAAAATATGTACATGTTTAGATGGTTTTGTACCAAAGTTCTATGAAAAGTGGAGTTCACTGGATTGGTCTGGTGGGTGTGTCAGAAGAGTAAATTTGAGTTGTGATGGTGATAGGTTTCGGAAGTACACAGGAATGAAGTTCCCAGACACTTCTTCTTCTTGGTATAACGAGAGTTTGAGCCTCGAGAAGTGTGAGGATTTGTGTTTGAAAAACTGTTCTTGCACAGCATTTGCAAATATAAATGCCAGTGCGAGAGGGTGCGTGCTTTGGTTTGGTGACATTACTGATTTGAGTAGACACACAGACCAAGGACAGGATATTTACATGAGACTTGAAGCTTCAGAGTTAGATCATGGAGGGAGTAATCAGAGCTTCAGTAGCAAGAATATCACAGGAATAATAGTAGGCATTGTTTTCTTGGTCGTGGTACTTGGATTGGCCACATTCACATATATGAAGAGGAAGAAGCTCGCGAAGAGAGAGGTGCTAAAAATATTTCATTGGAAGTTCAAAAGGGAGAAGGAAGATGTGGAGTTATCAAAAATATTTGATTTTTCAACCATCTCTGCTGCTACAAATAACTTTTCACCCAGTAACATATTAGGAGAAGGTGGCTTCGGCCCAGTGTACAAGGGTATACTGCAAGATGGGCAAGATATTGCAGTCAAGAGGCTTGCAAAAACTTCTGAACAAGGAGCGGAGCAGTTCAAGAATGAATTCATGTTAATGGCAAAACTTCAACATCGCAATCTTGTAAAACTTCATGGTTGTTCTATTCACCAAGAAGAAAGGCTCTTGATCTATGAATACATGCCCAACAGAAGCTTGGATTACTTCATTTTTGGTTTGAAATCTCACACCATGAAAACAATGGCTCGCCTTCAAATTATTGATGGTATAGCACGAGGGCTACTCTATCTTCACCAAGACTCTAGATTGAGAATCATCCACAGAGATCTGAAAGCCAGCAATATTCTTCTAGACAACGATATGAATCCAAAGATATCAGATTTTGGTTTGGCTAGAACGTTTGGAGGAGATCAAGCCGAGGCCAATACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCTGAATATGCTCTCCATGGACATTTTTCAATCAAATCTGATGTATTTAGCTTTGGTGTGATGGTAATGGAGATAATTAGTGGGAGAAAGAATCGCAGTTTTCATGACTCTAAGCATCAGCTTAATCTTCTTAGTCATGCATGGAGATTGTGGACTGAAGACAAGCCATTGGAGCTAATAGATGAGGTATTAGATTATCCAACCACACCATTTGAAATACTTAGATGCATTCATGTGGGTCTGTTATGTGTACAACAAACACCACAAAACAGACCAAACATGTCCTCTGTGGTTTTGATGTTGAATGGTGAAAAGGTGTTGCCTGAGCCAAGTCCACCTGGGTTCTACACAGGCACAACTACTCAGTTTCCCATTCAGGCAGAATCTTCTTCCAGAAGTTGTGGAGATAGAACACAAAATGAAGTTACAGTGTCCTTGTTACAGCCGCGATAG 2343 0.4089 MVSSAGTFEAGFFQLGNSEDQYFCIWYKNISPKTIVWVANRDAPVKNSTAFFTLTEQGVPVILDASGSVVWTSNSSRNAKKPVMQLLDSGNLVVQDGDSTKDLLWESFDYPGDTFLAGMKLRTNFVTGRVRFLTSWRNAEDPGFGEFSYHIDAHGYPQLVTTKGELLFSRGGPWNGNVFSGVSWRRTLRLLKFSLESNDKEIIYQYKTLEAETITRLVINPSGLVQRLLWSGGSRGWEILSTRPMDQCDYYSFCDVNSLCNVTNSPKICTCLDGFVPKFYEKWSSLDWSGGCVRRVNLSCDGDRFRKYTGMKFPDTSSSWYNESLSLEKCEDLCLKNCSCTAFANINASARGCVLWFGDITDLSRHTDQGQDIYMRLEASELDHGGSNQSFSSKNITGIIVGIVFLVVVLGLATFTYMKRKKLAKREVLKIFHWKFKREKEDVELSKIFDFSTISAATNNFSPSNILGEGGFGPVYKGILQDGQDIAVKRLAKTSEQGAEQFKNEFMLMAKLQHRNLVKLHGCSIHQEERLLIYEYMPNRSLDYFIFGLKSHTMKTMARLQIIDGIARGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGLARTFGGDQAEANTNRVMGTYGYMPPEYALHGHFSIKSDVFSFGVMVMEIISGRKNRSFHDSKHQLNLLSHAWRLWTEDKPLELIDEVLDYPTTPFEILRCIHVGLLCVQQTPQNRPNMSSVVLMLNGEKVLPEPSPPGFYTGTTTQFPIQAESSSRSCGDRTQNEVTVSLLQPR 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03166 780 Gene3D Transferase(Phosphotransferase) domain 1 537 737 - -
Vimu1g03166 780 Pfam D-mannose binding lectin 34 137 IPR001480 -
Vimu1g03166 780 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 2 722 - -
Vimu1g03166 780 Pfam Protein tyrosine and serine/threonine kinase 465 728 IPR001245 GO:0004672|GO:0006468
Vimu1g03166 780 Gene3D Phosphorylase Kinase; domain 1 435 536 - -
Vimu1g03166 780 CDD TM_EGFR-like 396 425 - -
Vimu1g03166 780 CDD STKc_IRAK 467 733 - -
Vimu1g03166 780 SMART ntp_6 300 377 IPR003609 -
Vimu1g03166 780 ProSiteProfiles PAN/Apple domain profile. 300 378 IPR003609 -
Vimu1g03166 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 581 593 IPR008271 GO:0004672|GO:0006468
Vimu1g03166 780 SUPERFAMILY Protein kinase-like (PK-like) 446 749 IPR011009 -
Vimu1g03166 780 ProSiteProfiles Bulb-type lectin domain profile. 1 107 IPR001480 -
Vimu1g03166 780 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 424 536 - -
Vimu1g03166 780 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 537 739 - -
Vimu1g03166 780 Pfam PAN-like domain 300 363 IPR003609 -
Vimu1g03166 780 Pfam S-locus glycoprotein domain 170 279 IPR000858 GO:0048544
Vimu1g03166 780 SMART serkin_6 461 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g03166 780 SUPERFAMILY alpha-D-mannose-specific plant lectins 35 142 IPR036426 -
Vimu1g03166 780 PIRSF SRK 1 780 IPR024171 GO:0004674
Vimu1g03166 780 SMART blect_4 2 111 IPR001480 -
Vimu1g03166 780 ProSiteProfiles Protein kinase domain profile. 461 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g03166 780 MobiDBLite consensus disorder prediction 758 780 - -
Vimu1g03166 780 CDD PAN_AP_plant 296 377 - -
Vimu1g03166 780 Gene3D - 1 108 IPR036426 -
Vimu1g03166 780 CDD B_lectin 2 111 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03166 Vimu-Chr1 43859745 43863541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03166 389 745 Receptor kinase-like Gene Family AT4G23230 50.833 1.21e-120 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu1g03166 PK_Tyr_Ser-Thr 7.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03166 - - var:108337036 1522.68