Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03165 ATGGTTTCTTCTGCTGGAACTTTTGAAGCTGGATTCTTTCAGTTTGAAAATTCACAAGATCAATACTTTTGTATATGGTACAAGAACATATCACCAAAGACTACTGTGTGGGTGGCCAACAGAGATGCCCCGGTGAAAAACTCAACAGCATTTTTCACACTAACAGAACAAGGAGTTCCTGTTATTCTTGATGCCTCAGGAAGTGTTGTGTGGTCCTCCAATTCATCAAGAACTGCTAAAATACCAGTTATGCAGCTTCTAGACTCGGGAAATCTTGTTGTGCAAGATGGAAACAACACAAAAGACCTTTTGTGGGAAAGTTTTGATTACCCTGGTGACACTTTCCTTGCAGGAATGAAACTTCGTACAAACTTTGAGACTGGTCCTTTTAGGTTTCTCACATCTTGGAGAAACGCAGAAGATCCTGGCTTTGGTGAGTTTTCATATCACATAGATGCTCATGGCTATCCTCAACTGGTTACTACAAAGGGAGAAATTTTGATCAGTAGAGGCGGGTCATGGACCGGCTATGCTTTCACTGGAGTTTCATGGAGAAGAATGCTTAGACTCGTAAATTTTTCGCTTGAGATTAACGACAAGGAAATCATTTACCAATACAGGACCTTAGAGGCTGAAACTATTACTAGGTTAGTGATCAGCCCATCTGGTTATGTACAACGTTTGTTATGGTCGGGTGGCAGCCAGAGTTGGGAGATTTTATCCACTCGTCCCATGGATCAATGTGAATATTATTCCTTTTGTGATGTGAATTCACTTTGTAATGTTACTAACTCTCCAAAAATATGTACATGTTTAGATGGTTTTGAACCAAAGTTCTATGAAAAGTGGAGTTCACAGGATTGGTCTGGTGGGTGTGTCAGAAGAGTAAATTTGAGTTGTGATGGTGATAGGTTTCGGAAGTACACTGGAATGAAGTTGCCAGATACTTCTTCTTCTTGGTATAACGAGAGTTTGAGCCTCGAGAAGTGTGAGGATTTGTGTTTGAAAAACTGTTCTTGCACAGCATTTGCAAATATAGATCCCAGTGGGGGAGGGTGCTTGCTTTGGTTTGGTGACATTACTGATTTGAGTACACACACAGACCAAGGACAAGATATTTACATGAGACTTGAAGCTTCAGAGTTAGATCATGGAGGGAGTAATCAGAGCCTCAATAGCAAGAATATTGCAGGGATAATAGTAAGCATTGTTTTCTTGGTCGTGGTACTTGGATTGGCCATATATATGAAGAGGAAGAAGCTCGCGAAGAGAGAGGTGCTAAAAATATTTCATTGGAAGTACAAAAGGGAGAAGGAAGATTTGGAGTTATCAACAATATTTGATTTTTCAACCATCTCTGCTGCTACAAATAACTTTTCACCCAGTAACATATTAGGAGAAGGTGGCTTCGGGCCAGTGTACAAGGGTATACTGAAAGATGGGCAAGAGATTGCAGTGAAGAGGCTTGCAAAAACTTCTGAACAAGGAGCAGAGCAATTCAAGAATGAAGTCATGTTAATGGCAAAACTTCAACATCGCAATCTTGTAAAACTTCATGGTTGTTCTATTCACCAAGAAGAAAGGCTCTTGATCTATGAATACATGCCCAACAGAAGCTTGGATTACTTCGTTTTTGGTTTGAAATCTCACACCATGAAAACTATGGCTCTTCATTTTGCTCTCTCTTGCTATCGTGTACGCCTTCAAATTATTGATGGTATAGCACGAGGGCTACTCTATCTTCACCAAGACTCTAGATTGAGAATCATCCACAGAGATCTGAAAGCCAGCAATATTCTTTTAGACAACGATATGAATCCAAAGATATCAGATTTTGGTTTGGCTAGAACATTTGGTGGAGATCAAGCTGAGGCAAATACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCTGAATATGCTCTCCATGGACATTTCTCAATCAAATCTGATGTATTTAGCTTTGGTGTGATGGTAATGGAGATAATTAGTGGGAAAAAGAATCGCAATTTTCATGACTCTGAGCATCAGCTTAATCTTCTTAGTCATGCATGGAGATTGTGGATTGAAGAAAAGCCAGTGGAGCTAATAGATGAGGTATTAGATTATCCAACCACACCACTTGAAGTACTTAGATGCATTCATGTGGGTCTATTATGTGTACAACAAACACCACAAAACAGACCAAACATGTCCTCGGTGGTTTTGATGTTGAATGGTGAAAAGGTGTTGCCTGAGCCAAGTCCACCTGGGTTCTACACAGGCACAACTCAGTTTCCCATTCAGGCAGAATCTTCTTCCAGAAGTTGTGGAGATAGATCACAAAATGAAGTTACAGTGTCCTTGTTACAGCCACGATAG 2364 0.4023 MVSSAGTFEAGFFQFENSQDQYFCIWYKNISPKTTVWVANRDAPVKNSTAFFTLTEQGVPVILDASGSVVWSSNSSRTAKIPVMQLLDSGNLVVQDGNNTKDLLWESFDYPGDTFLAGMKLRTNFETGPFRFLTSWRNAEDPGFGEFSYHIDAHGYPQLVTTKGEILISRGGSWTGYAFTGVSWRRMLRLVNFSLEINDKEIIYQYRTLEAETITRLVISPSGYVQRLLWSGGSQSWEILSTRPMDQCEYYSFCDVNSLCNVTNSPKICTCLDGFEPKFYEKWSSQDWSGGCVRRVNLSCDGDRFRKYTGMKLPDTSSSWYNESLSLEKCEDLCLKNCSCTAFANIDPSGGGCLLWFGDITDLSTHTDQGQDIYMRLEASELDHGGSNQSLNSKNIAGIIVSIVFLVVVLGLAIYMKRKKLAKREVLKIFHWKYKREKEDLELSTIFDFSTISAATNNFSPSNILGEGGFGPVYKGILKDGQEIAVKRLAKTSEQGAEQFKNEVMLMAKLQHRNLVKLHGCSIHQEERLLIYEYMPNRSLDYFVFGLKSHTMKTMALHFALSCYRVRLQIIDGIARGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGLARTFGGDQAEANTNRVMGTYGYMPPEYALHGHFSIKSDVFSFGVMVMEIISGKKNRNFHDSEHQLNLLSHAWRLWIEEKPVELIDEVLDYPTTPLEVLRCIHVGLLCVQQTPQNRPNMSSVVLMLNGEKVLPEPSPPGFYTGTTQFPIQAESSSRSCGDRSQNEVTVSLLQPR 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03165 787 ProSiteProfiles Bulb-type lectin domain profile. 1 107 IPR001480 -
Vimu1g03165 787 ProSitePatterns Serine/Threonine protein kinases active-site signature. 589 601 IPR008271 GO:0004672|GO:0006468
Vimu1g03165 787 Pfam D-mannose binding lectin 34 137 IPR001480 -
Vimu1g03165 787 SMART ntp_6 300 377 IPR003609 -
Vimu1g03165 787 Gene3D Phosphorylase Kinase; domain 1 421 534 - -
Vimu1g03165 787 SMART blect_4 2 111 IPR001480 -
Vimu1g03165 787 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 2 730 - -
Vimu1g03165 787 CDD STKc_IRAK 465 741 - -
Vimu1g03165 787 Gene3D - 1 108 IPR036426 -
Vimu1g03165 787 Pfam Protein tyrosine and serine/threonine kinase 463 736 IPR001245 GO:0004672|GO:0006468
Vimu1g03165 787 ProSiteProfiles Protein kinase domain profile. 459 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g03165 787 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 422 534 - -
Vimu1g03165 787 PIRSF SRK 1 787 IPR024171 GO:0004674
Vimu1g03165 787 Pfam PAN-like domain 300 363 IPR003609 -
Vimu1g03165 787 SMART serkin_6 459 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g03165 787 SUPERFAMILY Protein kinase-like (PK-like) 444 753 IPR011009 -
Vimu1g03165 787 Gene3D Transferase(Phosphotransferase) domain 1 535 745 - -
Vimu1g03165 787 CDD PAN_AP_plant 296 377 - -
Vimu1g03165 787 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 535 747 - -
Vimu1g03165 787 Pfam S-locus glycoprotein domain 170 279 IPR000858 GO:0048544
Vimu1g03165 787 MobiDBLite consensus disorder prediction 765 787 - -
Vimu1g03165 787 CDD B_lectin 2 111 IPR001480 -
Vimu1g03165 787 ProSiteProfiles PAN/Apple domain profile. 300 378 IPR003609 -
Vimu1g03165 787 SUPERFAMILY alpha-D-mannose-specific plant lectins 35 142 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03165 Vimu-Chr1 43854054 43857263 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03165 392 767 Receptor kinase-like Gene Family AT4G23190 48.731 1.48e-120 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu1g03165 PK_Tyr_Ser-Thr 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03165 - - var:108337036 1496.49