Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03128 ATGAAGCTTGGTTTCTTTCTGTTGTCTCTAGTTCTCTACCAGATGATACTAGAACCAGGGATCTTCAAAGTAGAAGGTGATGATCATGATGATGATGAGTTTGTGAGAGTAAGAGGGGTGCAGCTTCTCTTGAATGGGAAACCCTATTATGCTAATGGTTATAATGCTTATTGGCTCATGTACATGGCCTCTGATCCATCTCAGAGAAACAAGGTCTCATCTGCATTTCAAGTAGCTGCAAACCATGGACTTAGCATAGCAAGAACATGGGCTTTCAGTGATGCTGGAGATTACCCTCTTCAATATTCTCCTGGATCCTACAATGAAGACATGTTCCTGGGACTGGACTTTGTAATATCAGAAGCCAGAAAATATGGGACCAAGTTGGTGTTGAGTTTGGTGAATAACTATGATGACTTTGGAGGAAAGAAACAGTATGTTGAGTGGGCAAAGACTGAGGGCCAGTCCCTACATTCTGAAGATGACTTCTTCACAAACCCTCTTGTCAAGGAATTCTACAAAAACCATATCAAGAGTGTGCTCACAAGGCGTAATAACTTCACGGGAGTGGTTTACAAAGATGATCCAACCATAATGGCTTGGGAACTCATGAATGAAATTAGATGCCCTTCTGATCATTCAGGAAACACAGTTCAGATCATAGATGGAAACCATTTACTTGAAGCTGGTCTGGAGGGCTTCTATGGACTTTCAAAGAATGAGTCTAATCCAAATTTCCAAGTTGGAACAGATTTCATCGCAAACAATCAAATCCCTGCCATTGATTTTGCCACAGTTCATTCATACCCTGATCAATGGTTACCAGGATCAAGCAATGAAGAACAAACCTTGTTTTTGGTTCGATGGCTGAATGATCACATACAAGATGCACAGATTATTATTGAGAAACCAGTTTTGTTTGCTGAGTTTGGAGTATCAGTGAGAAACATGAGCAGTGAATCAATTACAATAAGGGATGAATTTTTCAACTTGGTTTATTCTTCAATCTATTCATCAGCAAGTGATGGTGGTGCAGCAACTGGTAGCTTGTTTTGGCATCTTTTAGCAGAAGGAATGGATTCTTTTAAAGATGGCTATGAAGTGCCCTTAGATGAGAATAGCTCAACTGCTACTTTGATTGCTCAAGAGTCTCAAAAGCTAAACAGAATCAGGATGAAGAAATAA 1185 0.3992 MKLGFFLLSLVLYQMILEPGIFKVEGDDHDDDEFVRVRGVQLLLNGKPYYANGYNAYWLMYMASDPSQRNKVSSAFQVAANHGLSIARTWAFSDAGDYPLQYSPGSYNEDMFLGLDFVISEARKYGTKLVLSLVNNYDDFGGKKQYVEWAKTEGQSLHSEDDFFTNPLVKEFYKNHIKSVLTRRNNFTGVVYKDDPTIMAWELMNEIRCPSDHSGNTVQIIDGNHLLEAGLEGFYGLSKNESNPNFQVGTDFIANNQIPAIDFATVHSYPDQWLPGSSNEEQTLFLVRWLNDHIQDAQIIIEKPVLFAEFGVSVRNMSSESITIRDEFFNLVYSSIYSSASDGGAATGSLFWHLLAEGMDSFKDGYEVPLDENSSTATLIAQESQKLNRIRMKK 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03128 394 FunFam Mannan endo-1,4-beta-mannosidase 6 31 391 - -
Vimu1g03128 394 SUPERFAMILY (Trans)glycosidases 34 379 IPR017853 -
Vimu1g03128 394 PANTHER - 8 392 IPR045053 GO:0004553
Vimu1g03128 394 Gene3D Glycosidases 30 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03128 Vimu-Chr1 43604091 43607150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03128 7 391 Glycoside Hydrolase AT5G66460 58.500 4.01e-164 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03128 K19355 - gmx:100817974 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03128 1 43604091 43607150 Vimu1g03128 1 43604091 43607150 ECH