Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03107 ATGCACTCTATTCCGCCGCAGCCGTCGATGGCTGCGGCCAGAGCGGAGGCGGAACAAGTCATGTTTGGTGCCGATATTGGTATTCTTATTGTGAATTGTAGCTTGTTTAACCCTACGCCCTCGCTCTCGGCAATGATTGTTAATAAGTATAAATTGAGAGGGAACATTAGGAGCTTTAATTTGGGAGGGATGGGGTGCAGTGCTGGGGTTATTGCGGTTGATCTTGCAAAGGATCTTCTGCAGATTCATAGGAACACTTATGCCGTGGTTGTTAGCACTGAGAACATTACTCAGAATTGGTACTTTGGGAACAAGAAGTCCATGCTCATCCCCAATTGCCTCTTCCGGGTCGGCTGCTCCGCACTGCTGCTGTCGAACAAGCTGGCCGATCGGAGGCGGGCGAAGTACCGGCTTGTCCATGTTGTGAGGACTCACCGCGGTGCCGATGACAAGGCGTTCCGGTGTGTTTACCAGGAGCAGGATGATGCTGGCAAGACTGGAGTTTCTTTGTCAAAGGATCCTTACATACCGGATTTCAAGCTTGCTTTTGATCACTTTTGCATACATGCTGGAGGCAGGGCTGTGATTGATGAGCTGGAGAAGAACCTGCAGCTGCGTCCTGACTCCATTTGGTATGAATTGGCTTACATTGAAGCCAAAGGGAGGGTGAGGAAGGGCAACAGGGTTTGGCAAATTGCATTTGGAAGTGGTTTCAAATGTAACAGTGCTGTTTGGCAGGCACTGAGGAATATTAAGCCTTCTCCTAATGGACCATGGGAAGATTGCATCGATAAGTATCCTGTGGAAATTCTCACATAG 819 0.4908 MHSIPPQPSMAAARAEAEQVMFGADIGILIVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDLLQIHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGCSALLLSNKLADRRRAKYRLVHVVRTHRGADDKAFRCVYQEQDDAGKTGVSLSKDPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLRPDSIWYELAYIEAKGRVRKGNRVWQIAFGSGFKCNSAVWQALRNIKPSPNGPWEDCIDKYPVEILT 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03107 272 CDD CHS_like 5 245 - -
Vimu1g03107 272 Pfam FAE1/Type III polyketide synthase-like protein 2 173 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vimu1g03107 272 SUPERFAMILY Thiolase-like 3 133 IPR016039 GO:0016746
Vimu1g03107 272 Gene3D - 209 246 IPR016039 GO:0016746
Vimu1g03107 272 PANTHER 3-KETOACYL-COA SYNTHASE 174 206 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vimu1g03107 272 SUPERFAMILY Thiolase-like 139 246 IPR016039 GO:0016746
Vimu1g03107 272 Gene3D - 163 208 IPR016039 GO:0016746
Vimu1g03107 272 Gene3D - 9 130 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03107 Vimu-Chr1 43476293 43477336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03107 1 270 Miscellaneous Gene Families AT1G19440 69.275 5.81e-169 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03107 K15397 - gmx:100816382 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03107 1 43476293 43477336 Vimu1g03107 1 43476293 43477336 ECH