Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03105 ATGGGAATGGGGGAAATTGCAGTGAGTGTGGTTTCAATGTTGTTGTTGATGGTTGGGTTAACAAGGGGAATGCGTTTGAGTTCAACAACGGAATGGTACGCGTTAAGGGAGCTTCGATCATCGTTGGGGATTAGGGCAAAGTATTGGCCCAAAAAAGCAGAACCTTGCGGGAACTGGACCGGAGTTCATTGCCGGAATGGTCGAGTTGTGGGTATAAACGTGTCCGGTTTGAGGAGAACCCGGTTGGGTAGCCTTAACCCAAGTTTTGAAGTGGGTTCTCTTGTGAATTTGACACTGTTGGAATCGTTTAATGCTTCTGGGTTCGTGCTTAATGGGTCCATTCCTGAGTGGTTGGGTGAGAGCATGAAGGTGTTGGATGTACTTGACCTTAGGCTTTGTTCTATTATGGGTTCGATTCCTTATTCAATTGGGGGGTTGAGTAGGTTGAAGGTTTTGGTGCTTTCAGGGAATTTTCTCACTGGTAAAATGCCTACAACGATTGGGAATCTCACAAGACTGACTGTTCTTGATCTCTCTAATAACTCTCTTTCAGGGTATATGCCTCCTTCTGTGACTCAACTTGGGAATCTCACAAGGCTTGATCTTTCTTACAACTACTTGAGTGGGTCTGTTCCACTTAAACTGGGTGCCCTTTCGAGTTTGCAAAATTTGAACCTTTCTGGGAATTCTTTCACTGGGTCGGTTCCCTCTCAACTCGGTAACCTTTCTGAGCTGGTTGAGGTTGATCTTAGCAAAAATTTTCTGTCGGGTTCATTTTTTGGAAATTTGTCTTTTTCACGGCTCTCGGCCCTCGAGGTTCTCATTCTCAGCGAGAATTCGTTTGATGGTGCCCTTCCTCATAATTTTAGCTCAACGCCCAGGTTGAGCTTTCTTGATGTGTCCAGTAACAATCTCACTGGGACACTACCGAATTTCACAAATGATAGCTCTGCTGGTGCTGTGTTCAATCTGTCAAATAATATGTTCTATGGACTTCTGAACACTTCACTGGACAAGTTTAAAACTATTGATTTGTCAAGTAATTATTTGGAAGGTGAGGTGCAAGGTGGTGGTAATGTTATTCTAGATAGAAATTGCCTACAGATGACTCCAAACCAGAGGAATTTGGAAGAGTGTAGAGCTTTTTATGCTGCAAGAAATTTACCCTTTTCATTCCCAGAATCTAAGTCCAGCAGAAGGGTGGTATTCATACTGGTAGGAATATTTGGTGGGCTTGGCTTTATTGCGGTGCTGACATTGGTCCTTGTGCTGGTTCTAAAACAATGTCACAATCATAGAAACTCGGAAGTTCAAAGGGGGACCAAAAAAGAGGGACCTGTTCAGGAAGGGGAAAGCCCTATACCTCCTAAGGATGCTGATTTTGTGCCTGGCGTGGGAGAAGCATTTAGTTCTGAGCAAATTATCCGTCTAACTGACAATTTTGCTGAAGCAAATGTCATAAAGAATGGCCATTCCGGGGTCCTCTTCTTGGGAGTCTTGGAAGGTGGAACAACTGTGGTTGTCAAAAAGATAGATTTGAATTTATTTAAGAGAGAATCATATGTCGTGGAATTGAGACTATTAAGTAAGGTTTCACATGCAAGATTGGTCCCAATCCTGGGCCACTGCTTGGACAATGAGAATGAGAAATGTATAGTTTACAAATACATGCCAAATAGAGATTTGGCTACTTCTTTGCACAGAGCCAATGAGTCAGATGGTAAATTACAGTCCCTAGATTGGATCACGAGATTGAAAATTGCAATAGGAGCTGCTGAAGGCCTAGCCTACCTACATGAGTGCAGCCCTCCCCTTGTCCACAGGGATGTCCAAGCTAGTAGTATACTTCTTGATGATAAATTTGAAGTGCGACTTGGAAGTTTGAGCCAGGTTACCGCCCAAGGAGATGTTCAACAGGGAGTCATCTCAAGGGTTTTCAACAAGCCATCTACTAGTGAAGGCGATCCTGGTAAATCATCAGTGACATGCACCTACGACGTGTACTGTTTCGGGAAGATTTTACTGGAACTCATTACAGGTAACATTGAAGTGAGCAAGTCAGATGATGGCACTACAAAAGAGTGGTTAGAGAAAACCTTGCCTTACATCACTCTGTACGATAAAGAACGTGTGACTAAGATTGTTGACCCACAACTGATCGTGGATGAGGACCTATTGGAAGAGGTATGGGCTATGGCAATTGTGGCTCATGCATGTTTGAATCCAAAGCCTTCCAAACGTCCTCCAATGAGACATGTCCTGAAAGCATTGGAAAATCCATTGAAGATTGTGAGAGAAGATAATAGCAGCTCAGCGAGGTTGAGATCAAACTCTTCTAGGAAATCTTGGAGCACTGCTTTCTTTGGTAGCTGGAGACACAGTTCATCAGACAGTGTTGTTGCCACAACACATGCAAACAAAGAGAGTAGCAGTGACACTAAAAAATCAAGAGTAGGTTCTCAAAGTAGTGGAAATGATCACTCATCTTCCAACAAAAGGTCATCCAATGAAATTTTCCCTGAACCATTGGAAGTGCAAGATGTGGAGGCTGGAGAGACAGGATAA 2565 0.4331 MGMGEIAVSVVSMLLLMVGLTRGMRLSSTTEWYALRELRSSLGIRAKYWPKKAEPCGNWTGVHCRNGRVVGINVSGLRRTRLGSLNPSFEVGSLVNLTLLESFNASGFVLNGSIPEWLGESMKVLDVLDLRLCSIMGSIPYSIGGLSRLKVLVLSGNFLTGKMPTTIGNLTRLTVLDLSNNSLSGYMPPSVTQLGNLTRLDLSYNYLSGSVPLKLGALSSLQNLNLSGNSFTGSVPSQLGNLSELVEVDLSKNFLSGSFFGNLSFSRLSALEVLILSENSFDGALPHNFSSTPRLSFLDVSSNNLTGTLPNFTNDSSAGAVFNLSNNMFYGLLNTSLDKFKTIDLSSNYLEGEVQGGGNVILDRNCLQMTPNQRNLEECRAFYAARNLPFSFPESKSSRRVVFILVGIFGGLGFIAVLTLVLVLVLKQCHNHRNSEVQRGTKKEGPVQEGESPIPPKDADFVPGVGEAFSSEQIIRLTDNFAEANVIKNGHSGVLFLGVLEGGTTVVVKKIDLNLFKRESYVVELRLLSKVSHARLVPILGHCLDNENEKCIVYKYMPNRDLATSLHRANESDGKLQSLDWITRLKIAIGAAEGLAYLHECSPPLVHRDVQASSILLDDKFEVRLGSLSQVTAQGDVQQGVISRVFNKPSTSEGDPGKSSVTCTYDVYCFGKILLELITGNIEVSKSDDGTTKEWLEKTLPYITLYDKERVTKIVDPQLIVDEDLLEEVWAMAIVAHACLNPKPSKRPPMRHVLKALENPLKIVREDNSSSARLRSNSSRKSWSTAFFGSWRHSSSDSVVATTHANKESSSDTKKSRVGSQSSGNDHSSSNKRSSNEIFPEPLEVQDVEAGETG 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03105 854 FunFam Putative LRR receptor-like serine/threonine-protein kinase 557 777 - -
Vimu1g03105 854 Pfam Protein tyrosine and serine/threonine kinase 486 756 IPR001245 GO:0004672|GO:0006468
Vimu1g03105 854 Gene3D Ribonuclease Inhibitor 187 263 IPR032675 -
Vimu1g03105 854 PRINTS Leucine-rich repeat signature 194 207 - -
Vimu1g03105 854 PRINTS Leucine-rich repeat signature 173 186 - -
Vimu1g03105 854 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 182 259 IPR046959 -
Vimu1g03105 854 SUPERFAMILY L domain-like 54 332 - -
Vimu1g03105 854 Gene3D Phosphorylase Kinase; domain 1 458 556 - -
Vimu1g03105 854 ProSiteProfiles Protein kinase domain profile. 481 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g03105 854 Gene3D Transferase(Phosphotransferase) domain 1 557 781 - -
Vimu1g03105 854 FunFam Leucine-rich repeat receptor protein kinase EMS1 188 288 - -
Vimu1g03105 854 MobiDBLite consensus disorder prediction 435 456 - -
Vimu1g03105 854 Pfam Leucine rich repeat 147 207 IPR001611 GO:0005515
Vimu1g03105 854 SMART LRR_typ_2 218 242 IPR003591 -
Vimu1g03105 854 SMART LRR_typ_2 170 194 IPR003591 -
Vimu1g03105 854 SMART LRR_typ_2 268 291 IPR003591 -
Vimu1g03105 854 SMART LRR_typ_2 146 169 IPR003591 -
Vimu1g03105 854 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 91 187 - -
Vimu1g03105 854 FunFam Predicted protein 452 556 - -
Vimu1g03105 854 MobiDBLite consensus disorder prediction 815 837 - -
Vimu1g03105 854 MobiDBLite consensus disorder prediction 799 854 - -
Vimu1g03105 854 Gene3D Ribonuclease Inhibitor 30 186 IPR032675 -
Vimu1g03105 854 Gene3D Ribonuclease Inhibitor 264 375 IPR032675 -
Vimu1g03105 854 SUPERFAMILY Protein kinase-like (PK-like) 464 757 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03105 Vimu-Chr1 43440326 43445520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03105 23 649 Miscellaneous Gene Families AT2G16250 48.440 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Vimu1g03105 PK_Tyr_Ser-Thr 3.8e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03105 - - gmx:100798381 1297.72