Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03099 ATGTTTCAGCGTTGGAGCAGTTCCCCTCAGCAAGACCAAGAAAGCAGCGAGCTTCATGCTGAATCAAAGACAACCTGTGTTTCTGGTGTTTTGTTGAGTAAGAATGATGTTGCTGATTATGAATGTTCAAAATTCTGCAAGCAGATCAAGGAGCTGAAGGGTGCAATTGGACCCTTATCAGGTCATGGTTTGGTGTATTGCACTGATGGATGTTTGAAGAGATATTTGGAAGCTCGAAACTGGAATGTAGACAAGTCCAAGAAGATGTTGGGGGAGACTCTGAAGTGGAGATCAACATATAAACCAGAGGAAATTCGCTGGCAAGAGGTTGCAATGGAAGGGGAGACTGGGAAATTGTATAGAGCAAGCTTTCGTGATAGACAAGGAAGAAGTGTTCTTATTCTGAGACCAGGAATGCAGAACACTACTTCAATGGAAAATCAGATGCGGCATTTTGTGTATATGTTGGAAAACGCCTTGCTTGACCTTCCACCGGGTCAAGAACAAATGGCATGGTTGATAGACTTCACTGGCTGGTCAATAACCAACAATGTGCCCTTGAAATCAGCCAGAGAGACTATCAACATTTTGCAGAATCATTACCCTGAGAGACTTGGCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCCTTTTGGAAGATAGTTAAGTACTTCTTGGATAGCAAGACATTTCAGAAGGTGAAGTTTGTGTACCCAAAGAACAAAGACAGTGTGGAGCTCATGAAGTCCTACTTTGATGAGGAAAACCTTCCCAAAGAACTAGGTGGAAAAAGCACAATGCGTTATAATCACGAGGAGTTCTCCAGATTAATGGTTCAGGATGATTTGAAATGTGCAGCATTTTGGGGGCCTGATGAGAAGCCCTCAAACCACATTGCTAATGGGCATTCTGCTGCAGTTTTCAATGAAACTTCACCTGACGCATGTTGA 957 0.4295 MFQRWSSSPQQDQESSELHAESKTTCVSGVLLSKNDVADYECSKFCKQIKELKGAIGPLSGHGLVYCTDGCLKRYLEARNWNVDKSKKMLGETLKWRSTYKPEEIRWQEVAMEGETGKLYRASFRDRQGRSVLILRPGMQNTTSMENQMRHFVYMLENALLDLPPGQEQMAWLIDFTGWSITNNVPLKSARETINILQNHYPERLGIAFLYNPPRVFEAFWKIVKYFLDSKTFQKVKFVYPKNKDSVELMKSYFDEENLPKELGGKSTMRYNHEEFSRLMVQDDLKCAAFWGPDEKPSNHIANGHSAAVFNETSPDAC 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03099 318 FunFam Phosphatidylinositol transfer protein 3 32 300 - -
Vimu1g03099 318 SUPERFAMILY CRAL/TRIO N-terminal domain 46 109 IPR036273 -
Vimu1g03099 318 SMART sec14_4 113 268 IPR001251 -
Vimu1g03099 318 CDD SEC14 125 266 IPR001251 -
Vimu1g03099 318 SMART CRAL_TRIO_N_2 68 93 IPR011074 -
Vimu1g03099 318 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 107 271 IPR001251 -
Vimu1g03099 318 SUPERFAMILY CRAL/TRIO domain 107 282 IPR036865 -
Vimu1g03099 318 Pfam CRAL/TRIO, N-terminal domain 66 90 IPR011074 -
Vimu1g03099 318 Gene3D - 3 290 IPR036865 -
Vimu1g03099 318 PANTHER GH16843P 23 297 - -
Vimu1g03099 318 Pfam CRAL/TRIO domain 125 265 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03099 Vimu-Chr1 43407921 43414083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03099 72 260 Acyl Lipid Metabolism Gene Families AT1G55840 27.962 1.94e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03099 K26544 - gmx:100790867 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03099 1 43407921 43414083 Vimu1g03099 1 43407921 43414083 ECH