Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03097 ATGGAAAGAAGTAAGGAAGCGAAATTATTGATGTTGTTAATCTGTGCAGGTTCTGAATCGTTTATCGGCGTGAACTATGGGCAAGTCGCCGACAACCTGCCGCCGCCTTCGGCGACGGCGAAGCTCCTCCAATCGACGGCGATAGGGAAAGTCCGGTTGTACGGAACTGACCCGGCGATAATAAAAGCGCTGGCGAACACGGGAATTGGAATCGTTATCGGCGCCGCGAACGGCGACATTCCGGGCCTGGCGTCGGACCCGAACTTCGCGAAAACGTGGGTGAACACCAACGTCGTGCCGTACTACCCCGCGAGCAACATCATCCTCGTGACCGTTGGCAACGAAGTGATAACCTCCAACGACGCGGGCCTCGTGAACCAGATGCTGCCGGCGATCCAGAACGTGCAGAGCGCGCTGGACGCGGCCTCTCTCGGCGGCAAGATCAAGGTGTCGACGGTGCACTCGATGGCGGTTCTGAGGGACTCGGAGCCTCCCTCCGCCGGAAGGTTCCACCCTGAGTACGACACCGTTTTGCAGGGGCTGTTGTCGTTTAACAATGCCACGGGCTCGCCCTTCGCCATCAACCCTTATCCCTACTTCGCCTACAGAAGCGACCCTGGCAGAGCCGATAACCTTGCTTTCTGCCTCTTTCAGCCTAACGCGGGCCGAATTGACTCTAACACCAACATCAAGTACATGAACATGTTCGATGCTCAGGTGGATGCGGTTCGCTCAGCGTTGGATTCTTTGGGGTTTAAGAATGTTGAAATTGTGGTTGCGGAGACAGGATGGCCCTACAAGGGAGACAGCAATGAAGCTGGTCCAAGTCTAGAGAATGCTAAGGCTTATAACGGTAATCTCATTGCACACCTTCGATCTATGGTTGGGACTCCATTGATGCCTGGAAAATCAGTGGACACGTACCTGTTTGCTCTGTATGATGAAGACTTGAAGCCCGGTGCTGCTTCTGAGAGAGCATTTGGACTTTTCAATCCTGACCAAACCATGATCTATGATGCTGGCCTCACCAAACAGCAACAAACCAGTAGCCCCGTGCCAGTAGTTGCTCCGACTCCGGATGTGTCAAAATCTCCAGTGATACCAGCGCCAACAGACCCGGGTCAAACACAAAAATCTCCAGTGATTCCAGCGCCAGTAGGCCCGGGTCCAACACCAAATAATGCAGAATTCTTGAGTGGACATGAAGCCACCATTTTGCAGTCTTTAATAATGTTCTCAACCACTCCGGATGTGTCAAAATCTCCCGTGACTCCAAAGCCAACAACAGTTCCAAGTCCAACCAAAACAAACTGGTGTGTGCCGAAAGCAGGAGTGTCAGATCCACAGTTGCAAGCAAATTTGGACTATGCTTGTGGGCAGGGGATTGATTGTACCGCAATTCAACAAGGAGGAGCTTGTTTTGAACCTAACACTTTACTAAACCATGCTGCATATGCCATGAATCTATTGTATCAAACTGCTGGACGGAATCCATTGACTTGTGATTTCTCCCAAACAGCCATGTTATCAACAAATAATCCAAGTAAGTAG 1551 0.5145 MERSKEAKLLMLLICAGSESFIGVNYGQVADNLPPPSATAKLLQSTAIGKVRLYGTDPAIIKALANTGIGIVIGAANGDIPGLASDPNFAKTWVNTNVVPYYPASNIILVTVGNEVITSNDAGLVNQMLPAIQNVQSALDAASLGGKIKVSTVHSMAVLRDSEPPSAGRFHPEYDTVLQGLLSFNNATGSPFAINPYPYFAYRSDPGRADNLAFCLFQPNAGRIDSNTNIKYMNMFDAQVDAVRSALDSLGFKNVEIVVAETGWPYKGDSNEAGPSLENAKAYNGNLIAHLRSMVGTPLMPGKSVDTYLFALYDEDLKPGAASERAFGLFNPDQTMIYDAGLTKQQQTSSPVPVVAPTPDVSKSPVIPAPTDPGQTQKSPVIPAPVGPGPTPNNAEFLSGHEATILQSLIMFSTTPDVSKSPVTPKPTTVPSPTKTNWCVPKAGVSDPQLQANLDYACGQGIDCTAIQQGGACFEPNTLLNHAAYAMNLLYQTAGRNPLTCDFSQTAMLSTNNPSK 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03097 516 Gene3D Glycosidases 21 350 - -
Vimu1g03097 516 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 14 509 IPR044965 GO:0004553|GO:0005975
Vimu1g03097 516 FunFam Glucan endo-1,3-beta-glucosidase 14 20 348 - -
Vimu1g03097 516 Pfam X8 domain 438 508 IPR012946 -
Vimu1g03097 516 Pfam Glycosyl hydrolases family 17 22 339 IPR000490 GO:0004553|GO:0005975
Vimu1g03097 516 SUPERFAMILY (Trans)glycosidases 22 340 IPR017853 -
Vimu1g03097 516 FunFam glucan endo-1,3-beta-glucosidase 7 433 516 - -
Vimu1g03097 516 Gene3D - 433 516 - -
Vimu1g03097 516 MobiDBLite consensus disorder prediction 344 364 - -
Vimu1g03097 516 SMART X8_cls 437 515 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03097 Vimu-Chr1 43386815 43388699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03097 1 388 Glycoside Hydrolase AT5G42720 63.750 1.21e-174 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03097 - - gmx:100802287 787.334