Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03085 ATGGAGTCCGAACTCCAAGACCTCAATCCGAAACCGCCGAAACAACCCGACCCGAACAATGACGGGCGTCCTCTCCTCAAGCCTTCCGCCGCCGACTCCTCCGGCGATCTCGAGAAAAAATTCGCTGCTTTCGTGCGGCACGATGTTTACGGTTCCATGGGACGCGGTGAGTTACCGACGCGGGAGAAGGTGCTGCTGGGTGTGGCGTTTGTGACGCTGGTTCCGGTGAGGGTGGTGGCGGTAACCACCATCCTGTTGCTCTATTACTTTATTTGTAGGGTTTGCACGATGGGCTCTGTCCCGAATCGCGTGGAGGAGCATCAGGAGGATTACGCGCACATTGTAGGGTGGAGGAGGATCGTCATTGTGCAGAGTGGAAGAGCCCTCTCCAGGCTCATGCTCTTTGTGTTCGGGTTTTATTGGATAACACACACGTATCGGATTCCACCGGCTCCCGTTGAAAATTCTACCACCACCAACGAGCAGGAAAACAATGCTCAGTCTGAAGACACAAGACCCGGTGTTATAATATCTAATCATGTGTCATATTTGGATATTTTGTATCACATGTATGCCTCGTTCCCGAGTTTTGTTGCCAAGAGATCAGTGGCTAAACTTCCTCTTCTTGGTCTCATCAGTAAGTGCCTTGGTTGCGTCCTGGTTCAACGGGAATCAAAGTCATCGGACTTTAAGGGTGTTTCAGGCTTCTGGATATATTCTGGCCGTTTGGCTTGTGTAGGGGTGTCCCAATTGTCTTCCGATTCTGCGTATTCATCTGTTGTCACTGAGAGAATTCGGGAAGCTCACCAAAATCCATCTGCTCCAACAATGATGTTATTCCCAGAAGGTACAACCACAAATGGGGAATTTCTCCTTCCGTTCAAGACTGGCGGTTTTTTAGCGAAAGCACCAGTACTTCCTGTAATTTTAACTTATCCTTACCAGAGATTTAGCCCTGCCTGGGAATCCATATCTGGCGTACGTCATGCGATTTTTATTCTCTGTCAGTTTGTAAATTATATGGAGGTGATTCAGTTACCTACTTACTATCCCTCGCAGCAGGAGCAGGATGATCCCAAACTATATGCTAATAATGTTAGAAGGTTGATGGCAAGCGAGGTTTGTTTTCCCAATGCTAACATGGCTTCATCATGGTCAGTGTTATGGTTGTATTGTGCTAAAGAAGGAAAAGATAGTTTAGGAAATCCAGTACTGGGCTACAGGAATTAG 1230 0.4772 MESELQDLNPKPPKQPDPNNDGRPLLKPSAADSSGDLEKKFAAFVRHDVYGSMGRGELPTREKVLLGVAFVTLVPVRVVAVTTILLLYYFICRVCTMGSVPNRVEEHQEDYAHIVGWRRIVIVQSGRALSRLMLFVFGFYWITHTYRIPPAPVENSTTTNEQENNAQSEDTRPGVIISNHVSYLDILYHMYASFPSFVAKRSVAKLPLLGLISKCLGCVLVQRESKSSDFKGVSGFWIYSGRLACVGVSQLSSDSAYSSVVTERIREAHQNPSAPTMMLFPEGTTTNGEFLLPFKTGGFLAKAPVLPVILTYPYQRFSPAWESISGVRHAIFILCQFVNYMEVIQLPTYYPSQQEQDDPKLYANNVRRLMASEVCFPNANMASSWSVLWLYCAKEGKDSLGNPVLGYRN 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03085 409 SMART plsc_2 174 313 IPR002123 GO:0016746
Vimu1g03085 409 Pfam Acyltransferase 165 308 IPR002123 GO:0016746
Vimu1g03085 409 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 276 373 - -
Vimu1g03085 409 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 133 226 - -
Vimu1g03085 409 PANTHER PHOSPHOLIPID ACYLTRANSFERASE 32 377 - -
Vimu1g03085 409 MobiDBLite consensus disorder prediction 1 33 - -
Vimu1g03085 409 CDD LPLAT_LPCAT1-like 131 371 IPR045252 GO:0008374
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03085 Vimu-Chr1 43283826 43290352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03085 1 373 Acyl Lipid Metabolism Gene Families AT1G80950 57.841 6.41e-152 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03085 K13510 - qsa:O6P43_016147 481.1