Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03080 ATGGCCACCGACGGAGCTACCTCGGCGGCGGCGGCGGCGGCGAGTAGGAGAAAGCCGTCGTGGAGGGAGAGAGAGAATAACCGAAGAAGAGAACGGAGGAGAAGAGCGATCGCGGCGAAAATATACTCTGGACTTCGAGCTCAGGGGAACTATAACTTGCCAAAGCACTGTGACAACAACGAAGTTCTCAAAGCGCTTTGTGCCGAAGCTGGTTGGTGCGTCGAAGAAGATGGCACTACCTATCGTAAGGGTTGCAAGCCACCTCTGGCCAATGGTGTGGGGAACTCAATGAGAAACGTTCCCTTTTGCTCTTCTCAAAGCCCAAGTCCTTTTTCTTCGTCGTACCCCAGTCCAATTCCTTCATACCAAGTGAGTCCTTCTTCCTCCTCTTTCCCAAGCCCCTTTCGGTTAGATGTGGATAAGGATAATGTATCAAACCTCATTCCATACATTCGCAATGCGTCCCTGTCTCTTCCTCCTCTGAGGATATCAAACAGTGCCCCTGTAACGCCGCCTCTTTCATCACCTACGTCAAGAAATCCGAAACCAATTCCTACATGGGAGTCTATTGCCAAAGAATCCATGGCATCCTTTAATTACCCTCTCTTTGCAGCTTCTGCTCCTGCCAGCCCCACTCACCGTCATCTTTACACCCCGGCCACTATTCCAGAATGTGATGAGTCTGATACTTCCACCTGCGAGTCTAACCAGTGGATGAAATTCCAAGCGTTTGGTCCTTCTGCATCTACGTTACCAGCTTCTCCAACTTTCAATCTTGTTAAACCTTTGGTTCCACACGGTGTGCCTGATAATTCAATCCAAGAGATGAGAACGAGTTCAGAAGAGTTTGGGGTACAGGTAAAGCCTTGGGTTGGGGAGAAAATTCATGAAGTGGCATTGGATGATTTGGAACTAACGCTTGGAAGCGGGAAGGTGAGGAGTTAG 945 0.4952 MATDGATSAAAAAASRRKPSWRERENNRRRERRRRAIAAKIYSGLRAQGNYNLPKHCDNNEVLKALCAEAGWCVEEDGTTYRKGCKPPLANGVGNSMRNVPFCSSQSPSPFSSSYPSPIPSYQVSPSSSSFPSPFRLDVDKDNVSNLIPYIRNASLSLPPLRISNSAPVTPPLSSPTSRNPKPIPTWESIAKESMASFNYPLFAASAPASPTHRHLYTPATIPECDESDTSTCESNQWMKFQAFGPSASTLPASPTFNLVKPLVPHGVPDNSIQEMRTSSEEFGVQVKPWVGEKIHEVALDDLELTLGSGKVRS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03080 314 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 14 313 IPR033264 GO:0003700|GO:0006351|GO:0009742
Vimu1g03080 314 Pfam BES1/BZR1 plant transcription factor, N-terminal 15 154 IPR008540 -
Vimu1g03080 314 MobiDBLite consensus disorder prediction 17 32 - -
Vimu1g03080 314 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03080 Vimu-Chr1 43250487 43254878 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03080 16 313 BZR Transcription Factor Family AT1G75080 66.349 3.66e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vimu1g03080 BES1_N 4.6e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03080 K14503 - gmx:100807071 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03080 1 43250487 43254878 Vimu1g03080 1 43250487 43254878 ECH