Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03079 ATGACATCCGACGGAGCTACTTCGGCTGCGGCGGCGGCGGCGGCGAGTAGGAGAAAGCCGTCGTGGAGGGAGAGAGAGAATAACCGTAGGAGAGAACGAAGACGAAGAGCGATCGCGGCGAAAATATACTCTGGACTTCGAGCTCAGGGGAACTATAACTTGCCAAAGCACTGTGACAACAACGAAGTTCTCAAAGCGCTTTGTGCAGAAGCTGGTTGGTGCGTCGAAGAAGACGGAACCACATATCGCAAGGGTTCCAAACCACCACTGGCCAATGGTGCAGGGAGCTCCATGAGAAACATTCTCTTTTCTACTTCACAAAATCCAAGTCCGTTTTCTTCGTCGCATCCCAGCCCAATTCCTTCATACCAAGTGAGTCCTTCTTCCTCCTCTTTCCCAAGCCCGTTTCGGTTAGATGTGGATAAGGACAATGTATCAAACCTCATTCCATACATCCGCAATGCCTCTCTGTCTCTTCCTCCTCTGAGGATATCAAACAGTGCCCCTGTGACGCCGCCTCTGTCATCACCTACGTCAAGAAATCCAAAACCAATTCCTACATGGGAGTCCATTGCCAAAGAATCTATGACCTCCTTCAACTACCCTCTCTTTGCAGCTTCTGCTCCTGCTAGCCCCACGCACCGTCACCTTTACACCCCGGCCACTATTCCAGAGTGTGACGAGTCTGATACTTCCACCTGTGAATCTAGCCAGTGGGTGAAATTTCAAGCATTTGCTCCTTCTGCATCTGTGTTGCCAACTTCTCCAACCTTCAATCTTGTTAAACCCGTGGTTCCTCCCGGTGTGCCTGATAGCTCAATCCAAGAGATGAGGACGAGTTCAGAAGAGATTGGAGTACAGGTAATGCCTTGGGTTGGTGAAAGAATTCATGAAGTGGCATTGGATGATTTGGAACTCACTCTTGGAAGCGGGAAGCTACCTCATCCAGTGTCGTTGGTGCAAGCAGTTTATCGGGAAGAGACTGTTATTATTGGGAACTTGATTTATCTGATGCTGTGGGCATTTTATGGAGAAAATGATCTCCTTCCATCCATGGCTTGGGTAAAATGTAGAAATGAGAATTTCACCTCCTCCCTTCGTGGTTAA 1107 0.4887 MTSDGATSAAAAAAASRRKPSWRERENNRRRERRRRAIAAKIYSGLRAQGNYNLPKHCDNNEVLKALCAEAGWCVEEDGTTYRKGSKPPLANGAGSSMRNILFSTSQNPSPFSSSHPSPIPSYQVSPSSSSFPSPFRLDVDKDNVSNLIPYIRNASLSLPPLRISNSAPVTPPLSSPTSRNPKPIPTWESIAKESMTSFNYPLFAASAPASPTHRHLYTPATIPECDESDTSTCESSQWVKFQAFAPSASVLPTSPTFNLVKPVVPPGVPDSSIQEMRTSSEEIGVQVMPWVGERIHEVALDDLELTLGSGKLPHPVSLVQAVYREETVIIGNLIYLMLWAFYGENDLLPSMAWVKCRNENFTSSLRG 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03079 368 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 10 312 IPR033264 GO:0003700|GO:0006351|GO:0009742
Vimu1g03079 368 MobiDBLite consensus disorder prediction 1 33 - -
Vimu1g03079 368 Pfam BES1/BZR1 plant transcription factor, N-terminal 16 155 IPR008540 -
Vimu1g03079 368 MobiDBLite consensus disorder prediction 101 126 - -
Vimu1g03079 368 MobiDBLite consensus disorder prediction 18 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03079 Vimu-Chr1 43218433 43220627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03079 1 312 BZR Transcription Factor Family AT1G19350 67.665 4.09e-118 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vimu1g03079 BES1_N 5.1e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03079 K14503 - gmx:100807071 494.967