Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03072 ATGTTTGGTAATGTAGCATCTGCCACAGTGTTCACCCTCCAAAACCGTTGCGGTTACACAGTTTGGCCGGGGACACTTTCCGGCAACGGCGTAGCCACTCTCGGCGACGGCGGTTTCCCCCTGGAGCCGGGTGCGGAGGTTCAGCTCACCGCACCATCTGGCTGGTCCGGCCGGTTATGGGCCAGGACCGGCTGTAGCTTCGACGGGTCCGGCATCGGAACATGCGTAACCGGAGACTGCGCCAGTGGACTGCGGTGCACCGGGGGAGGCGTTCCACCGGCCACTCTGGCAGAGTTCACCATCGGATTCGCCGGTAACGGCGACAAGGACTTCTACGACGTGAGTCTTGTGGACGGTTACAATGTAGGCATCGGCGTGCGGGCTACCGGAGGAACCGGTGACTGCCAGTACGCAGGGTGCTCGGCGGACTTGAACGCAGTGTGTCCGGAGGAATTGCAAGTGAGAGACGGCGGCGGCGCGGTGGTTGCGTGCAAAAGCGCTTGCGCCGCGTTTAACACGTCGGTGTTTTGCTGCACCGGCGAGCACGGAACGCCGCAAACGTGTTCGGCGACACATTATTCGGAGATTTTCAAGAATGCGTGTCCAACAGCGTACAGTTACGCTTACGATGATGCTTCCAGCACTTGCACCTGTTCTGGATCTGATTTTGTTATCGCCTTTTGCCCTTAA 690 0.5942 MFGNVASATVFTLQNRCGYTVWPGTLSGNGVATLGDGGFPLEPGAEVQLTAPSGWSGRLWARTGCSFDGSGIGTCVTGDCASGLRCTGGGVPPATLAEFTIGFAGNGDKDFYDVSLVDGYNVGIGVRATGGTGDCQYAGCSADLNAVCPEELQVRDGGGAVVACKSACAAFNTSVFCCTGEHGTPQTCSATHYSEIFKNACPTAYSYAYDDASSTCTCSGSDFVIAFCP 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03072 229 ProSiteProfiles Thaumatin family profile. 8 229 IPR001938 -
Vimu1g03072 229 FunFam Thaumatin-like protein 1a 9 229 - -
Vimu1g03072 229 SUPERFAMILY Osmotin, thaumatin-like protein 10 229 IPR037176 -
Vimu1g03072 229 PANTHER OS03G0233200 PROTEIN 8 229 IPR001938 -
Vimu1g03072 229 Gene3D Thaumatin 9 229 IPR037176 -
Vimu1g03072 229 CDD TLP-PA 10 228 - -
Vimu1g03072 229 PIRSF PR5 1 229 IPR001938 -
Vimu1g03072 229 SMART tha2 11 229 IPR001938 -
Vimu1g03072 229 ProSitePatterns Thaumatin family signature. 71 86 IPR017949 -
Vimu1g03072 229 PRINTS Pathogenesis-related protein signature 219 228 IPR001938 -
Vimu1g03072 229 PRINTS Pathogenesis-related protein signature 10 22 IPR001938 -
Vimu1g03072 229 PRINTS Pathogenesis-related protein signature 71 100 IPR001938 -
Vimu1g03072 229 PRINTS Pathogenesis-related protein signature 58 69 IPR001938 -
Vimu1g03072 229 Pfam Thaumatin family 15 229 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03072 Vimu-Chr1 43144495 43145659 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03072 11 229 Receptor kinase-like Gene Family AT5G38280 46.018 4.23e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03072 - - gmx:100808830 410.609