Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03071 ATGTCTCTGCTTTTCCACCTTCTCTTTCTTCTCTTAGGTAATGTAGCATCTGCCACGGTATTTTCTCTCGAGAATCATTGTAGTTACACTGTTTGGCCGGGGACGCTTTCCGGCAACGGCGCCGGCATTCTCGGTAATGGCGGTTTCGCCCTGCAGCCCGGTTCGTCGGTCCATCTCACAGCTCCTTCCGGCTGGTCAGGCCGCTTCTGGGCCCGGACCGGATGCACCTTTGACGACTCCGGCGCCGGAAAATGCGCCACCGGAGACTGTGCCGGGGGACTTAAATGCACCGGCGGAGGAGTCCCGCCGGTGACGCTGGTGGAGTTCACGATCGGAAGCTCCGGCAACGGTAACAAGGACTTCTACGACGTGAGTCTCGTGGACGGTTACAACGTGGGAATGGGAGTGAGGGCTACTGGGGGAACCGGTGACTGCAAGTACGCGGGGTGCGTGGCGGACCTGAACGGCGCGTGTCCAGCGGAGCTTCAGGTTAGAGACGGGGGCGGCGCGGTGGTGGCGTGCAAGAGCGCGTGCGCGGCGTTTAACACGGCGGAGTTTTGCTGTACCGGCGAGCACGGGTCGCCGGAAACGTGTTCGCCTACACATTATTCGGAGATTTTCAAGAGTGCGTGTCCAACAGCTTACAGTTACGCATACGATGATGCTTCCAGCACTTTCACATGTTCACAATCTGATTATGTTATCACTTTCTGTTCAATGGGATCATCATCTTGA 735 0.5755 MSLLFHLLFLLLGNVASATVFSLENHCSYTVWPGTLSGNGAGILGNGGFALQPGSSVHLTAPSGWSGRFWARTGCTFDDSGAGKCATGDCAGGLKCTGGGVPPVTLVEFTIGSSGNGNKDFYDVSLVDGYNVGMGVRATGGTGDCKYAGCVADLNGACPAELQVRDGGGAVVACKSACAAFNTAEFCCTGEHGSPETCSPTHYSEIFKSACPTAYSYAYDDASSTFTCSQSDYVITFCSMGSSS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03071 244 ProSiteProfiles Thaumatin family profile. 18 238 IPR001938 -
Vimu1g03071 244 PRINTS Pathogenesis-related protein signature 20 32 IPR001938 -
Vimu1g03071 244 PRINTS Pathogenesis-related protein signature 229 238 IPR001938 -
Vimu1g03071 244 PRINTS Pathogenesis-related protein signature 81 110 IPR001938 -
Vimu1g03071 244 PRINTS Pathogenesis-related protein signature 68 79 IPR001938 -
Vimu1g03071 244 SMART tha2 21 239 IPR001938 -
Vimu1g03071 244 Gene3D Thaumatin 19 238 IPR037176 -
Vimu1g03071 244 SUPERFAMILY Osmotin, thaumatin-like protein 20 238 IPR037176 -
Vimu1g03071 244 CDD TLP-PA 20 238 - -
Vimu1g03071 244 PANTHER OS03G0233200 PROTEIN 8 238 IPR001938 -
Vimu1g03071 244 ProSitePatterns Thaumatin family signature. 81 96 IPR017949 -
Vimu1g03071 244 PIRSF PR5 1 244 IPR001938 -
Vimu1g03071 244 FunFam Thaumatin-like protein 1a 19 239 - -
Vimu1g03071 244 Pfam Thaumatin family 25 238 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03071 Vimu-Chr1 43135947 43136859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03071 1 244 Receptor kinase-like Gene Family AT5G38280 44.622 2.78e-64 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03071 - - gmx:100809378 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03071 1 43135947 43136859 Vimu1g03071 1 43135947 43136859 ECH