Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03068 ATGATGTTCTATTCAAATCTCTCCCTCTTAGTATTATTATTCTTCTTTTTCTTCTCGTGCGTGTACTCCGCAAACAACCTCTTCACCCAACAATTCAAAGAAGCACCTCAATTCTACAACTCCCCAAAATGTCCTTCTCTTTCCAACACCCAACATTCAAACCTATTATGCTCCGAACAAGTTGTCCACGTGGCAATGACGCTGGACACCACATACATCCGAGGTTCAATGGCGGCGATCCTCTCCGTCCTCCAACACTCCTCCTGCCCACAAAACGTCTTCTTCCATTTCGTCTGCTCCTCCAACGCCTCCCTCCTACGCGCCACAGTCGCCACCTCCTTCCCCTACCTCAATTTCCAAATCTACCCCTTCCACGACCACCTCGTTTCCGGCCTCATCTCCACCTCAATCCGCGCCGCACTCGATTGCCCCCTCAACTACGCGCGCAGCTACTTCCCCACCCTAATCCCACGCTGCGTCAAGCGCGTGGTGTACCTCGACTCCGACCTCGTACTGGTCGACGACATCGCCAAACTGGCAGCCACGCCGTTGGGTGAACACAGTGTGCTGGCGGCGCCGGAATACTGCAACGCGAACTTCACCTCCTACTTCACGCCCACGTTCTGGTCGAACCCTTTGCTGTCGCTGACGTTCGCGGAGCGGAGAGCCTGTTACTTCAACACGGGGGTGATGGTGATTGATTTGGAACGGTGGCGCGTGGGGGAGTACACGAGGAAGATCGAAGAGTGGATGGAGGTTCAGAAGAGGATGAGAATCTACGAACTGGGTTCGTTACCGCCGTTTTTGCTTGTGTTTGCGGGGAACATTGTTCCGGTGGATCATAGGTGGAACCAGCACGGTCTCGGAGGAGACAACTTTCATGGTCTGTGTCGGGATCTTCACCCTGGTCCTGTTAGTTTGCTGCATTGGAGTGGCAAGGGTAAACCTTGGGTCCGATTGGACGGTAACAGACCTTGTCCTCTCGATGCTCTTTGGTCACCTTATGATCTTCTACGCACCCCATTTTCTCTCGATTCTTGA 1041 0.5331 MMFYSNLSLLVLLFFFFFSCVYSANNLFTQQFKEAPQFYNSPKCPSLSNTQHSNLLCSEQVVHVAMTLDTTYIRGSMAAILSVLQHSSCPQNVFFHFVCSSNASLLRATVATSFPYLNFQIYPFHDHLVSGLISTSIRAALDCPLNYARSYFPTLIPRCVKRVVYLDSDLVLVDDIAKLAATPLGEHSVLAAPEYCNANFTSYFTPTFWSNPLLSLTFAERRACYFNTGVMVIDLERWRVGEYTRKIEEWMEVQKRMRIYELGSLPPFLLVFAGNIVPVDHRWNQHGLGGDNFHGLCRDLHPGPVSLLHWSGKGKPWVRLDGNRPCPLDALWSPYDLLRTPFSLDS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03068 346 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 11 339 - -
Vimu1g03068 346 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 63 325 IPR029044 -
Vimu1g03068 346 FunFam Hexosyltransferase 63 326 - -
Vimu1g03068 346 Pfam Glycosyl transferase family 8 63 319 IPR002495 GO:0016757
Vimu1g03068 346 SUPERFAMILY Nucleotide-diphospho-sugar transferases 62 337 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03068 Vimu-Chr1 43114603 43117429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03068 30 346 Glycosyltransferase AT1G19300 74.769 3.49e-174 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03068 K20893 - gmx:100806754 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03068 1 43114603 43117429 Vimu1g03068 1 43114603 43117429 ECH