Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03067 ATGAATCATGTTGCATTTCTCTTCACAATAACGTTGTTTCTTCTTTGTTTTGATGGCAAGGCACAGCAAAATTACTCTGGGAATTCAATTCTCAGCTGCAAGAATGATGACAAAATGGGGCCTTCACCTTCATTCCTCTATACCTGCAATGGCCTCAACAAATCATGCATGGCCTTCTTAATCTTCAAATCAAGACCACCTTTTAACACCATACTCACAGTGTCCAACCTCACATCATCAAACCCAGAAGAGCTTGCAAGAATCAATGATGTAACTGTGCTCACAGAGTTCCCAACTGGGAAAGAAGTGATTGTCCCTCTGAACTGTTCTTGTTTAAATAGGGACTATTACCAAGCTGAAACCGAATATGTATTGGGGCAATCCCCAACATATTTCACAGTGGCAAATACTACTTTTCAGGGTTTGACCACTTGTGATTCGCTCATGCGTGCTAATCCATATGGGGAATTTGATTTGCTTCCTGGCATGGAGTTGCACGTGCCACTCAGATGTGCTTGTCCAACAATGCATCAGGTCACGGACGGCACCAAGTATTTGCTGACATACTCAGTGAACTGGCATGATAACATTACAAGTATTGCTACGAGATTCAATGTAGCAGCAGGTAATTTGGTTGATGCTAATGGTTTTAACACACCAACAGAAACTCTTTTTCCCTTCACAACTGTTCTTATTCCTTTGCCAAGTGAACCTCTGAGTTCAATGACCAAAGTTGTTAGTGATCCACCAGATATGTCACCTTCTCTTATTTGCAGCTCCATGAAGTGCAAGTCAAAGAGGAAATTCTACACTGCTATTGCCACCACAGGGGGTTCCATTGTGGTTCTGTGTGCTGTCCTTTATGGGGTTTTTCTGTTCAGAAAGAGATCTGCAAGGTTCGTTAAGAGAGGTGAAGAAGGTGAGAAAGCAAAGGGGTTATCTTCAGATGATATCCGTGGTGAGATAGCAATCATTGAGCATCACTCTAAAGTTTACGAGTTTGAGGAAATAAAGGAGGCCACAGAAAATTTTAGTTCAAAGAATAGAATTAAAGGTTCTGTGTTTCGTGGGGTATTTGGTAATGACAAGAACATATTGGCTGTTAAAAAAATGAGAGAAGATGCGTCCAAGGAAGTGAATTTGCTGAAAAGAATCAATCATTTCAACCTGATAAAGCTGCAGGGTTACTGTGAAAACGATGCCTGTTCTTATCTTGTTTATGAGTATATGGAAAATGGCTCTTTGAGAGAATGGCTAAGCAAAAACAGGACTACCGAGCACCAGATTTTGGCAAAGAGGATTTTGATTGCTCTGGATATTGCAAATGGTCTTCAGTATCTTCACAACTTCACGGAACCTTCCTATGTGCACAGGAACATAAACAGTGGAAACATTCTTCTAAACAAAGATCTGAGAGCCAAGATAGCAAATTTCGCACAAGCTGAAGAATCAGAAAGGAAAATAACTTCCGGTTGTGCCTTGTCAGATATGGAGAGGGGTTATATTGCTCCAGAGTATCTGGAGGCAGGGATAGTGACCACCAAAATGGACGTTTATGCTTTTGGAGTGGTACTGTTGGAATTGATCACAAGTAAAGATTTTGTTACTATACCAGAAGAAAGAGAAGCAATGGTTCATGTAATCATAGTAAACTTCACTGGAAAAGAGAATGAAGAAGAGAAGGTGAGTATGTTCGTTGATCCTAGCTTCACTGGAAACAATGAGAAAGTGTGTGCTCTCCAGCTAGTTAAATTAGGTCTAACCTGCTTGATTCAACAACCAGAAGAGAGACCAACCATGGTAGAGGTAGTCTCTAGCTTATTGAAAATATATGTAAGTTATATGGACCAAATATTACCACTTAGCATCAACAATAGTCTCAGCATGGAGATGTGA 1896 0.404 MNHVAFLFTITLFLLCFDGKAQQNYSGNSILSCKNDDKMGPSPSFLYTCNGLNKSCMAFLIFKSRPPFNTILTVSNLTSSNPEELARINDVTVLTEFPTGKEVIVPLNCSCLNRDYYQAETEYVLGQSPTYFTVANTTFQGLTTCDSLMRANPYGEFDLLPGMELHVPLRCACPTMHQVTDGTKYLLTYSVNWHDNITSIATRFNVAAGNLVDANGFNTPTETLFPFTTVLIPLPSEPLSSMTKVVSDPPDMSPSLICSSMKCKSKRKFYTAIATTGGSIVVLCAVLYGVFLFRKRSARFVKRGEEGEKAKGLSSDDIRGEIAIIEHHSKVYEFEEIKEATENFSSKNRIKGSVFRGVFGNDKNILAVKKMREDASKEVNLLKRINHFNLIKLQGYCENDACSYLVYEYMENGSLREWLSKNRTTEHQILAKRILIALDIANGLQYLHNFTEPSYVHRNINSGNILLNKDLRAKIANFAQAEESERKITSGCALSDMERGYIAPEYLEAGIVTTKMDVYAFGVVLLELITSKDFVTIPEEREAMVHVIIVNFTGKENEEEKVSMFVDPSFTGNNEKVCALQLVKLGLTCLIQQPEERPTMVEVVSSLLKIYVSYMDQILPLSINNSLSMEM 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03067 631 Pfam LysM domain 195 233 IPR018392 -
Vimu1g03067 631 Gene3D LysM domain 176 244 IPR036779 -
Vimu1g03067 631 Gene3D Phosphorylase Kinase; domain 1 307 409 - -
Vimu1g03067 631 FunFam PTI1-like tyrosine-protein kinase 3 410 618 - -
Vimu1g03067 631 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 4 613 - -
Vimu1g03067 631 Gene3D Transferase(Phosphotransferase) domain 1 410 619 - -
Vimu1g03067 631 ProSiteProfiles LysM domain profile. 187 232 IPR018392 -
Vimu1g03067 631 SUPERFAMILY Protein kinase-like (PK-like) 327 607 IPR011009 -
Vimu1g03067 631 Pfam Protein tyrosine and serine/threonine kinase 367 607 IPR001245 GO:0004672|GO:0006468
Vimu1g03067 631 ProSiteProfiles Protein kinase domain profile. 295 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03067 Vimu-Chr1 43105256 43107151 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03067 4 610 Receptor kinase-like Gene Family AT2G23770 37.008 6.52e-122 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vimu1g03067 PK_Tyr_Ser-Thr 7.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03067 - - gmx:100806221 1030.78