Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03065 ATGAATCATGTTGCATTTCTCTTCACAATAACGTTTTTTCTTCTTTGTTTTGATTGCAAGGCACAGCAAAATTACTCTGGGAATTCAGTTCTCAGCTGCAAGAATGATGACAAAATGGGGCCTTCACCTTCATTCCTCTATACCTGCAATGGCCTCAACAAATCATGCATGGCCTTCTTAATCTTCAAATCAAGACCTCCTTTTAACACCATACTCACAGTGTCCAACCTCACATCATCAAACCCAGAAGAGCTTGCAAGAATCAATGATGTAACTGTGTTCACAGAGTTCCCAACTGGGAAAGAAGTGATTGTCCCTATGAACTGTTCTTGTTTAAGTAGGGACTATTACCAAGCTGAAACTGAATATGTATTGGGGCAATCCCCAACATATTTCACAGTGGCAAATACTACTTTTCAGGGTTTGACCACTTGTGATTCGCTCATGCGTGCTAATCCATATGGGGAATTTGATTTGCTTCCTGGCATGGAGTTGCACGTCCCACTCAGATGTGCTTGTCCAACAATGCATCAAGTCACAAACGGCACCAAGTATTTGCTGACATACTCAGTGAACTGGCATGATAACATTACAAGTATTGCTACGAGATTCAATGTAGCAGCAGGTAATTTGGTTGATGCTAATGGTTTTAACACACCAACAGAAACTCTTTTTCCCTTCACAACTGTTCTTATTCCATTGCCAAGTGAACCACTGAGTTCAATGACCAAAGTTGTTAGTGATCCACCAGATATGTCACCTCCTCTTATTTGGAGCTCCATGAAGCGCAAGTCAAAGAGGAAATTCCACACTGCTATTGCCACCACAGGGGGTTCCATTGTGGTTCTGTGTGCTGTCTTTTATGGGGGTTTTCTGTTCAGAAAGAGATCTGCAAGGTTCGTTAAGAGAGGTGAAGAAGGTGAAAAAGCAAAGAGCTTATCTTCAGATGATATCCGTGGTGAGATAGCAATCATTCAGCATCACTCTAAAGTTTTTGAGTTTAAGGAAATAAAGAAGGCCACAAAAAAATTTAGTTCAAAGAATAGAATTAAAGGTTCTGTGTTTCGTGGGGTATTTGGTAATGACAAGAACATATTGGCTGTTAAAAAAATGAGAGGAGATGCGTCCAAGGAAGTGAATTTGCTGAAAAGAATCAATCATTTCAACCTGATAAAGCTGCAGGGTTACTGTGAAAACGATGCTTGTTCTTATCTTGTTTATGAGTATATGGAAAATGGCTCTTTGAGAGAATGGCTAAGCAAAAACAGGACTACCGAGGACCAGATTTTGGCAAAGAGAATTTTGATTGCTCTGGATATTGCAAATGGTCTTCAGTATCTTCACAACTTCACGGAACCTTCCTATGTGCACAAGAACATAAACAGTGGAAACATTCTTCTAAACAAAGATCTAAGAGCCAAGATAGCAAATTTCGCATTTGCTGAAGAATCAGAAAGGAAAATAACTTCCAGTTGTGCCTTGTCAGATGTGGAGAGGGGTTATATTTCTCCAGAGTATCTGGAGGCAGGGATAGTGACCACCAAAGTGGACGTTTATGCTTTTGGAGTGGTACTGTTGGAATTGATCACAAGTAAAGATTTTGTTACTATACCAGAAGAGAGAGAAGCAATGCTTCATGTAGTCATAGTAAACTTCATTGGGAAAGAGAATGAAGAAGAGAAGGTGAGTATGTTCGTTGATCCTAGCTTCACTGGAAACAATGAGAAAGTGTGTGCTCTCCAGCTAGTTAAATTAGGTCTAACCTGCTTGATTCAACAACCAGAAGAGAGGCCAACCATGGTACAGGTAGTCTCTAGCTTATTGAAAATATATGTAAGTTATATGGACAAAATAAAAAATATTTCCGCTTAG 1872 0.3969 MNHVAFLFTITFFLLCFDCKAQQNYSGNSVLSCKNDDKMGPSPSFLYTCNGLNKSCMAFLIFKSRPPFNTILTVSNLTSSNPEELARINDVTVFTEFPTGKEVIVPMNCSCLSRDYYQAETEYVLGQSPTYFTVANTTFQGLTTCDSLMRANPYGEFDLLPGMELHVPLRCACPTMHQVTNGTKYLLTYSVNWHDNITSIATRFNVAAGNLVDANGFNTPTETLFPFTTVLIPLPSEPLSSMTKVVSDPPDMSPPLIWSSMKRKSKRKFHTAIATTGGSIVVLCAVFYGGFLFRKRSARFVKRGEEGEKAKSLSSDDIRGEIAIIQHHSKVFEFKEIKKATKKFSSKNRIKGSVFRGVFGNDKNILAVKKMRGDASKEVNLLKRINHFNLIKLQGYCENDACSYLVYEYMENGSLREWLSKNRTTEDQILAKRILIALDIANGLQYLHNFTEPSYVHKNINSGNILLNKDLRAKIANFAFAEESERKITSSCALSDVERGYISPEYLEAGIVTTKVDVYAFGVVLLELITSKDFVTIPEEREAMLHVVIVNFIGKENEEEKVSMFVDPSFTGNNEKVCALQLVKLGLTCLIQQPEERPTMVQVVSSLLKIYVSYMDKIKNISA 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03065 623 Gene3D Phosphorylase Kinase; domain 1 305 409 - -
Vimu1g03065 623 FunFam PTI1-like tyrosine-protein kinase 3 410 620 - -
Vimu1g03065 623 ProSiteProfiles Protein kinase domain profile. 295 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g03065 623 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 5 613 - -
Vimu1g03065 623 Pfam Protein tyrosine and serine/threonine kinase 369 607 IPR001245 GO:0004672|GO:0006468
Vimu1g03065 623 SUPERFAMILY Protein kinase-like (PK-like) 326 607 IPR011009 -
Vimu1g03065 623 ProSiteProfiles LysM domain profile. 187 232 IPR018392 -
Vimu1g03065 623 Pfam LysM domain 195 233 IPR018392 -
Vimu1g03065 623 Gene3D LysM domain 175 244 IPR036779 -
Vimu1g03065 623 Gene3D Transferase(Phosphotransferase) domain 1 410 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03065 Vimu-Chr1 43084614 43086485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03065 4 610 Receptor kinase-like Gene Family AT2G23770 36.278 1.03e-118 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vimu1g03065 PK_Tyr_Ser-Thr 3.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03065 - - gmx:100806221 988.793