Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03063 ATGGGTTGGCTTAGCAGAATTTTCAAAGGGTCTGAGCAGAAGATTTCGGAGGGGCATTATAGTAAAGAGGATGCTGGTTATTATTTGCCATCGACTTCGGGGGATGTTTGGAACCAGAACGAGAATGAGGATATAGATCGTGCTATTGCACTGTCGCTGGTGGAAGAGAGCGAGCGAACACACAATGTAAATGACAACAGATCACAGTTAGAAGAAGATGAACAACTTGCCAGAGCTTTAGAAGAAAGTCTAAACGTGGAGTCTCCTCCCAGATATGGAAATGAAAATGCGTATCAACCAATTCAGTATTTCCCCATGGGGTCCAGGTACGAGTTAGATATTGGTTATGGCCGATATCTTAATTGCTTGAACGCATTCTGGCATCCTGAATGCTTCCGCTGCCGAGCTTGCAACCTACCAATCTCTGATTATGAGTTCTCCACATCTGGGAATTACCCTTATCATAAATCATGTTATAAGGAAAGCTACCACCCGAAATGTGATGTCTGCAAGCACTTTGTAAGTATTTTGAACAAGCTTTAG 543 0.4291 MGWLSRIFKGSEQKISEGHYSKEDAGYYLPSTSGDVWNQNENEDIDRAIALSLVEESERTHNVNDNRSQLEEDEQLARALEESLNVESPPRYGNENAYQPIQYFPMGSRYELDIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFVSILNKL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03063 180 ProSiteProfiles LIM domain profile. 105 165 IPR001781 -
Vimu1g03063 180 PANTHER PROTEIN DA1-RELATED 2 3 175 IPR045218 -
Vimu1g03063 180 SMART lim_4 116 158 IPR001781 -
Vimu1g03063 180 Pfam Ubiquitin interaction motif 71 84 IPR003903 -
Vimu1g03063 180 Pfam Ubiquitin interaction motif 41 53 IPR003903 -
Vimu1g03063 180 Gene3D Cysteine Rich Protein 108 178 - -
Vimu1g03063 180 Pfam LIM domain 120 160 IPR001781 -
Vimu1g03063 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 175 - -
Vimu1g03063 180 Coils Coil 63 83 - -
Vimu1g03063 180 SMART uim 71 90 IPR003903 -
Vimu1g03063 180 SMART uim 40 59 IPR003903 -
Vimu1g03063 180 CDD LIM_DA1 112 159 - -
Vimu1g03063 180 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 40 59 IPR003903 -
Vimu1g03063 180 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 71 90 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03063 Vimu-Chr1 43078142 43080448 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu1g03063 LIM 1.6e-05 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03063 - - gmx:100809736 313.153