LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g03053	ATGGCATCATCGTCTTCCTCGACGCTCTCCTCCCCATTCCTGCGACTGGAGTTCCCCTCTGCAAGAAAACAACGTTCTTCCAATTACGTCCCCTTCATCAGAGCCTCCGTTTCTGAGAAACCACCACCGGCAGTGTCGGTCACCTCCCCCGAGCCCACCAAGCTCCCCATCCGCAAAATCCCCGGTGACTGGGGTTTGCCGGTCATCGGTCCCTTAAAGGACCGTCAAGACTATTTCTACAATCAAGGCCGCGACGAGTTCTTCAAATCTCGCATCCAAAAGTACCAGTCAACGGTCTTCCGCACCAACATGCCTCCCGGTCCCTTCATCACCTTCAAACCAAACGTCGTCGTTCTACTCGACGCCAAGAGCTTCCCCGTCCTCTTCGACACCTCCAAGGTCGAGAAAAAAGATGTTTTCACCGGAACATACATGCCCTCCACCGACCTCACCGGCGGCTACAGAGTCCTCTCCTACCTCGACCCCTCCGAACCCAAACACGCCCTCCTCAAGCAGCTCATGTTTTTCCTCCTCAAGTCCCGACGCGCCCACGTCATCCCGGAGTTCCACGCCTCCTACGAAGACCTCTTCAACCAGCTCGAGTCCGACCTCGCCGAAACCGGCAAAGCCAGCTTCGGCGACGCCAACGACCAAGCCGCGTTCAACTTCCTCGCCCGGTCCCTCTTCGCCGCCAACCCCGCCGACACCAAACTGGGCCAAGACGGCCCAAAGATAGTGCAGAAATGGGTTCTCTTCCAGCTGGGCCCACTCCTCCGCCTGGGTCTCCCTCAGTTTCTGGAAGAATCCACCATTCGCACCTTCCGCCTCCCTGCCTCCCTCATCAAGAAAGACTACCAGAGACTCTACGACTTCTTCTACTCCTCTTCTTCCTCCGTCCTCGACGAAGCAGAGCGATTGGGAATCACGCGCGACGAGGCTTGCCACAATCTTTTGTTCGCCACCTGCTTCAACTCCTTCGGCGGGATGAAGCTGTTCTTCCCCAACATCATCAAGTGGATCGGACGAGCGGGGGTGAAGCTCCACGCGCGCCTGGCGCAGGAGATTCGGTCCGCCGTGAGAGACGCCGGCGGGGAGATCACGATGGCGGCGATGGAGAAGATGCCTCTGATGAAGTCGGTGGTTTACGAAGCCTTCCGCATCGACCCTCCAGTGCCGTTGCAGTTCGGGAGGGCGAAGAGGGACCTTCTGATCGAGAGCCACGATCACGCCTTCCAGGTGAAGGAGGGGGATCTGCTTTTCGGGTACCAACCGTTTGCCACGAAGGATCCTAGGATCTTCGAGAGGGCCGAGGAATTTGTGGGAGACCGGTTCGTAGGGGAAGAAGGAGAGAAGCTCCTGAAACACGTGCTGTGGTCGAATGGACCTGAAACTGAATCTCCCACACTCGGAAACAAGCAATGTGCTGGGAAGGATTTCGTGACCTTAGTCTCAAGGCTTCTTCTTGTCGAGTTTTTTCTCCGTTATGACTCCTTCGATATTCAGGTTGGAACTTCTCCGTTAGGTTCTAAAGTCACCATTACCTCCCTCAAGAGATCAAGCTTTTAG	1566	0.5639	MASSSSSTLSSPFLRLEFPSARKQRSSNYVPFIRASVSEKPPPAVSVTSPEPTKLPIRKIPGDWGLPVIGPLKDRQDYFYNQGRDEFFKSRIQKYQSTVFRTNMPPGPFITFKPNVVVLLDAKSFPVLFDTSKVEKKDVFTGTYMPSTDLTGGYRVLSYLDPSEPKHALLKQLMFFLLKSRRAHVIPEFHASYEDLFNQLESDLAETGKASFGDANDQAAFNFLARSLFAANPADTKLGQDGPKIVQKWVLFQLGPLLRLGLPQFLEESTIRTFRLPASLIKKDYQRLYDFFYSSSSSVLDEAERLGITRDEACHNLLFATCFNSFGGMKLFFPNIIKWIGRAGVKLHARLAQEIRSAVRDAGGEITMAAMEKMPLMKSVVYEAFRIDPPVPLQFGRAKRDLLIESHDHAFQVKEGDLLFGYQPFATKDPRIFERAEEFVGDRFVGEEGEKLLKHVLWSNGPETESPTLGNKQCAGKDFVTLVSRLLLVEFFLRYDSFDIQVGTSPLGSKVTITSLKRSSF	521

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g03053	521	Gene3D	Cytochrome P450	55	521	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vimu1g03053	521	Pfam	Cytochrome P450	348	496	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vimu1g03053	521	CDD	CYP74	89	514	-	-
	Vimu1g03053	521	PRINTS	E-class P450 group IV signature	427	445	IPR002403	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vimu1g03053	521	PRINTS	E-class P450 group IV signature	474	492	IPR002403	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vimu1g03053	521	PRINTS	E-class P450 group IV signature	374	390	IPR002403	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vimu1g03053	521	FunFam	Allene oxide synthase, chloroplastic	55	521	-	-
	Vimu1g03053	521	PANTHER	CYTOCHROME P450 26	55	495	-	-
	Vimu1g03053	521	SUPERFAMILY	Cytochrome P450	55	503	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

Showing 1 to 9 of 9 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g03053	Vimu-Chr1	42954639	42957461	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu1g03053	33	521	Cytochrome P450	AT5G42650	65.644	0.0	671

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g03053	K01723		-	gmx:100037481	920.998

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