Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03049 ATGTTCACCAATTCACATACGCTAATGCAAACTTTGTTGTCAACTTTGCCGGAGCCAGACCTCTCCTTGAACATAAGCCCTCCCTCTATTTCGGATCTTTCTGAGGTCAAGGAACTAGGGTGTTTCGGCAAAGTCGTTTACAGCGACATGTGTTCAACTTCTGATTCCGGGAGCAGTGGAGGAAGTGATTTGAGCCATGAGTTTCACAACCTTGGTCACCATCGTGAGCCAACGTTGAAGTTAGGCTTTGGAACAATGGATTTGAATCCTCGCCATCATCAGCTTCATGGTGACACCAGAAGCTTCACTCACCATAACCACCACCACCACCACCACCTTCAGCCCCACATCTACGGCCGCGATTTCAAACGAACTGCAAGAGTCGTCAATGGCGTCAAAAGAAGCGTCAGGGCTCCTCGGATGAGATGGACCACCACCCTCCATGCCCATTTTGTTCACGCGGTTCAACTTCTTGGCGGTCATGAAAGAGCAACTCCAAAGTCTGTGTTAGAGTTAATGAATGTTAAGGATCTAACCCTAGCACACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGGCACCACAGGTCATGGGCAGACAGATATTGCAGTATTGAATCCAAGGCAAGGGATTAACATTGTTCATCTGCATGCACCTTCACCCAATTTACCAGACCCGATTCAAAGTTCCCACAGGACAGCGTGGCAACAATCATCAATAGAGACAAAAACAAAGAACAGTAGACAAGAAGCAGAGATGGGTTTGACGTATTGTGAGGTGAAGGGAAGTGAAAGCATGGTAAGTTGTGACACAAATGGATGTAGCTTCTGGCTTGTAGTTTTGTTGCATGCATTTATGAATATTCTCCAAATGGCTTATGTCACTAAAAAGGGATGTGTTTGGGAGAGAGATGAGGAATGGGATAAAGGAATTTTGCTAAAGAACATATGCTTGAGTCCAAGGAATTTTTCAGGCATTGTCTTTGATGTCATTTTCTGTGGAAGCTATAGAATAGAACATGATGAAAATTAA 1050 0.4457 MFTNSHTLMQTLLSTLPEPDLSLNISPPSISDLSEVKELGCFGKVVYSDMCSTSDSGSSGGSDLSHEFHNLGHHREPTLKLGFGTMDLNPRHHQLHGDTRSFTHHNHHHHHHLQPHIYGRDFKRTARVVNGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGTTGHGQTDIAVLNPRQGINIVHLHAPSPNLPDPIQSSHRTAWQQSSIETKTKNSRQEAEMGLTYCEVKGSESMVSCDTNGCSFWLVVLLHAFMNILQMAYVTKKGCVWERDEEWDKGILLKNICLSPRNFSGIVFDVIFCGSYRIEHDEN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03049 349 NCBIfam myb-like DNA-binding domain, SHAQKYF class 139 192 IPR006447 GO:0003677
Vimu1g03049 349 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 19 257 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vimu1g03049 349 FunFam Myb family transcription factor 137 195 - -
Vimu1g03049 349 Pfam Myb-like DNA-binding domain 140 191 IPR001005 -
Vimu1g03049 349 Gene3D - 138 195 - -
Vimu1g03049 349 SUPERFAMILY Homeodomain-like 136 193 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03049 Vimu-Chr1 42911397 42914896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03049 102 207 G2-like Transcription Factor Family AT5G42630 75.472 6.64e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu1g03049 Myb_DNA-binding 1.5e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03049 - - vra:106764099 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03049 1 42911397 42914896 Vimu1g03049 1 42911397 42914896 ECH
Vimu1g03049 1 42911397 42914896 Vimu10g03354 10 43614726 43619438 PCT