Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03047 ATGGGTGTTCAGAGTTGTAACGGTTGCAGATCCTGGGAGGAGGACATTTACTGGTCTCATTTTCAATTCCACCATTTCGCGCAGTTTCTCCGCACGGGTTTTGATCAACATCTTGCACTTCCGAAGACATTTTCAGACAACTTAAAGAAGAAGCCGCCTGCAAATGTGACCCTAAAGGGTCCTAGTGGTGTTGGGTGGAACGTAGGGATGATTACTAGTGGAGATACCTTGTACTTTGCTGGTGGTTGGGAGCAGTTTGTGAAAGATCACTGTTTGAAGGAGAATGATTTCCTGGTTTTTAAGTATAATGGTGAATTTCAGTTTGATGTTTTAGTGTTTGATGGGGGGAGCTTGTGTGAGAAGGCATCTTCTTATTTTGTTCGCCAATGTGGACACACCGAAGCTGAACATGTGGGTGGAAGTCAAAACAAGAAAAGGGACAATGCAGAAGATCCTATGAATGAAGGTCACATCCCTTTAAAAGCTGGTGTGGAATGTGCTCCACCTGGGAAATCTGTGCATGCTAATGGTACCAAGGAGCCAATTAATGTACCTTTTGAAACTCCTACTCCCAGTGAAGAGGCTTTCAATGAAGATGTTGAATCTGCTGGTGCTGAGCAAATTACATCGGATGGAGTCCCTCTGTCAGCTGTTCCTAAAGAAACTGCTAATGGAAAAAGGATCAGGAAGCTTGCTTCAGTTGTTAAGCATGTGCAGACCAAACGGAGAGGCAGGGGCAGACCAGCTAAAGTGTCTACTGTTATAGAGAGAGCACTTGACTGGGTGTCTGGACTAGATGCTGAACCTGTTTCTGCTGTTAGAAGTGCGGCACAAGAGGCATTTATATCAAATAGAAGGCCTGTCACAGATGATGAGATTAAAAATGCCTTAGCATTGGCCCAGGCAGGACGTACTGATGACAGTTTGGTTGTAGTCATGCGACCCTCTCACGTCTACAAGAGATTCTTTGTGTCAATGCCCAACAAGTGGATAGGAGAACATATCCCTCCAATGTCTCAAGATGTGATCTTGCGCATGTGCACGGGTGAATGGACTGCTAGATACAGCTACCATAATATTCGTCATACTGGTGGACTTACTGGTGGGTGGAAACACTTTGTCTTGGACAACAACCTGGAAGAGTATGATGTTTGTGTGTTTAAACCAGCTGGCCAAATGAACGACAAATTGGTCCTTAATATGAGCATTTTCAGAGTTGTTGAGGAAATTGTTCCTCTTTCTGTTATGTCTCCAACAGGAAAAAGAGGAAGAAAACCAGCACAGAATAATGTTACTCTGACTGAAACGTAA 1311 0.4401 MGVQSCNGCRSWEEDIYWSHFQFHHFAQFLRTGFDQHLALPKTFSDNLKKKPPANVTLKGPSGVGWNVGMITSGDTLYFAGGWEQFVKDHCLKENDFLVFKYNGEFQFDVLVFDGGSLCEKASSYFVRQCGHTEAEHVGGSQNKKRDNAEDPMNEGHIPLKAGVECAPPGKSVHANGTKEPINVPFETPTPSEEAFNEDVESAGAEQITSDGVPLSAVPKETANGKRIRKLASVVKHVQTKRRGRGRPAKVSTVIERALDWVSGLDAEPVSAVRSAAQEAFISNRRPVTDDEIKNALALAQAGRTDDSLVVVMRPSHVYKRFFVSMPNKWIGEHIPPMSQDVILRMCTGEWTARYSYHNIRHTGGLTGGWKHFVLDNNLEEYDVCVFKPAGQMNDKLVLNMSIFRVVEEIVPLSVMSPTGKRGRKPAQNNVTLTET 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03047 436 CDD B3_DNA 308 405 IPR003340 GO:0003677
Vimu1g03047 436 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 32 409 IPR044837 -
Vimu1g03047 436 SMART B3_2 26 116 IPR003340 GO:0003677
Vimu1g03047 436 SMART B3_2 309 407 IPR003340 GO:0003677
Vimu1g03047 436 MobiDBLite consensus disorder prediction 138 154 - -
Vimu1g03047 436 Gene3D - 19 119 IPR015300 -
Vimu1g03047 436 Gene3D - 288 409 IPR015300 -
Vimu1g03047 436 CDD B3_DNA 32 114 IPR003340 GO:0003677
Vimu1g03047 436 MobiDBLite consensus disorder prediction 417 436 - -
Vimu1g03047 436 MobiDBLite consensus disorder prediction 136 158 - -
Vimu1g03047 436 SUPERFAMILY DNA-binding pseudobarrel domain 309 393 IPR015300 -
Vimu1g03047 436 ProSiteProfiles B3 DNA-binding domain profile. 23 116 IPR003340 GO:0003677
Vimu1g03047 436 Pfam B3 DNA binding domain 310 399 IPR003340 GO:0003677
Vimu1g03047 436 Pfam B3 DNA binding domain 36 114 IPR003340 GO:0003677
Vimu1g03047 436 SUPERFAMILY DNA-binding pseudobarrel domain 20 114 IPR015300 -
Vimu1g03047 436 ProSiteProfiles B3 DNA-binding domain profile. 309 407 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03047 Vimu-Chr1 42883243 42885952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03047 4 405 REM Transcription Factor Family AT4G33280 33.806 9.87e-73 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu1g03047 B3 2.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03047 - - pvu:PHAVU_001G018400g 691.034