Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03045 ATGGGGTGTGACTGTGGGGGGAAGTTAAGTTTGAGAAAGCCTCATTTTTATGAGGTTTATTCCTCTGCCTTCAGCTCTCACAGACTGAAAATTCCAGATGGATTTGTGTGTCGCATGGAAGGAAGGACGTACGGGTCATTTTCATTGACTGGTCCCAGTGGAAACGTATGGACAGTGCAATTACTTAAGCAGGACAATGATCTATTCTTCCATCATGGATGGTCGTCATTTGTGGTGGATCATCGTCTAGAATGTGGTGACCTTTTGGTTTTCAGATACGATGGTCACTTGCATTTTACCGTCCAAGTATTTGATAAGGATGCATGTGAGAAAGAGGCAGCATTTATGTCTGAATGTAGTCAAAGTTCGAGTGACTTTGAGGAAATTGTCGGACACAAAAGAGATGTGAAGGAGAGTTCTTCTTTGGATATTGCATTTGATGGTGTTGCAAAGAAAAGGAGAGGTTGTAAATATGAGAACCGGGAACTTGAACCAGGGTTTGTTGGTAAAGAACTATTGCGATATGAGGTAGTAAGACCGATTAGAATGTTCAGAGAAACTGAAGAAACCTCGAAAGCTTGTTTGGCTAATGATAGCCTTGTGCCTTTTCACTTGGACAATCGAAATGAAGAGGCTGCCATCCTGTACAGAAGTGGAAAGGAAGATGGTCATTATTTTCTTGGTGGAGTTTCATTATCAAATGTATCAGCACAGGATGAGAAAAAAGTTGCTCAATCTTTTACTTCCAAATTTCCGTATTTTGTTAGAATCATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGCTTCGGCAGCAAAGAAGGAAAGGAAAGACATCTGAAATGGAAACACGCTTTCAGATGTCTTTCCTTTCTTTCTTTGCTGCCGAAGCTTTTCAATGGAATATCCCATATCAGTTTTCCATGGCACACCTTCCCAATTGCAAGATAAAAATTATTCTTCATAATTTGAAAGGAGAACATTGGACTGTTAATTCTGTGCCAACAACTAGAGTGCATACTAGTCACACACTTTGTGGAGGGTGGATGGCTTTCGTTCGTGGTAATAACATTAAGATTGGAGATATCTGTATTTTTGAGCTTGTGAACGAGTGTGAATTACGTGTTCACATTGCTGGGATTGGAAAAGATGGTCTAGAAGACGACCAGGTTGGAAGAGTGAATGCAGGGCATGCTGGAACCACCAGATATATGCCAATGAATACTAAAGTAAACTCAAAGTCCATAAGAAAAGTTGATCTATCAGATAAAAAATGGCCCAAGATTGGTCAAGAAACTGTTTTATCCATTGACCTTAAGAAATCTGGTAGAGCTTCAAATACTTCTAAGAAGATGGGCCTTTCCCCTCAGTCCAAAGCTGCCCATAAAAAGTTGGCTACTCCGAGGAGACATCGGGTTGAAGATGAGCTAAGCTCACAGGCTAAATCTGGTTTGAGAATGTTGTTTGCACTCGATGAACAAAGAGTAGCTCAAGCTTTTAGTTCCCCTTTTCCCAGTTTTGTTAAAATCATGAAAATGTTTAATGTCAGTGGCTCATACACTCTGAAAATCCCATACCAGTTCTCAGCTGCACATCTCCCAACTTACAAAACTGAAGTTATACTTCGTAATTCAAGAGGTGAATGTTGGACTGTGAACTCTGTCCCAGATGCAAAAGGCCGAACAGTTCACACCTTTTGTGGGGGTTGGATGGCATTTGTTCGTGACAATGACATAAATTTTGGAGACACATGCATTTTTGAACTTGTTACTCAATGTGAGATGCAGGTGTACATATCTGGGGTCGGAAAGGAAGGGCCTGACCATCAAAATGCCCACTTAAAACTTGACAGATTATCTATCCTTCCATCTACCTGCTAA 1881 0.4062 MGCDCGGKLSLRKPHFYEVYSSAFSSHRLKIPDGFVCRMEGRTYGSFSLTGPSGNVWTVQLLKQDNDLFFHHGWSSFVVDHRLECGDLLVFRYDGHLHFTVQVFDKDACEKEAAFMSECSQSSSDFEEIVGHKRDVKESSSLDIAFDGVAKKRRGCKYENRELEPGFVGKELLRYEVVRPIRMFRETEETSKACLANDSLVPFHLDNRNEEAAILYRSGKEDGHYFLGGVSLSNVSAQDEKKVAQSFTSKFPYFVRIMKSFNVSGSYTLLRQQRRKGKTSEMETRFQMSFLSFFAAEAFQWNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKIGDICIFELVNECELRVHIAGIGKDGLEDDQVGRVNAGHAGTTRYMPMNTKVNSKSIRKVDLSDKKWPKIGQETVLSIDLKKSGRASNTSKKMGLSPQSKAAHKKLATPRRHRVEDELSSQAKSGLRMLFALDEQRVAQAFSSPFPSFVKIMKMFNVSGSYTLKIPYQFSAAHLPTYKTEVILRNSRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVTQCEMQVYISGVGKEGPDHQNAHLKLDRLSILPSTC 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03045 626 CDD B3_DNA 21 105 IPR003340 GO:0003677
Vimu1g03045 626 Pfam B3 DNA binding domain 507 594 IPR003340 GO:0003677
Vimu1g03045 626 Pfam B3 DNA binding domain 21 106 IPR003340 GO:0003677
Vimu1g03045 626 Pfam B3 DNA binding domain 302 378 IPR003340 GO:0003677
Vimu1g03045 626 ProSiteProfiles B3 DNA-binding domain profile. 507 603 IPR003340 GO:0003677
Vimu1g03045 626 Gene3D - 492 602 IPR015300 -
Vimu1g03045 626 Gene3D - 234 381 IPR015300 -
Vimu1g03045 626 ProSiteProfiles B3 DNA-binding domain profile. 286 382 IPR003340 GO:0003677
Vimu1g03045 626 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 27 380 IPR044837 -
Vimu1g03045 626 SUPERFAMILY DNA-binding pseudobarrel domain 500 601 IPR015300 -
Vimu1g03045 626 MobiDBLite consensus disorder prediction 442 477 - -
Vimu1g03045 626 Gene3D - 9 109 IPR015300 -
Vimu1g03045 626 SUPERFAMILY DNA-binding pseudobarrel domain 286 380 IPR015300 -
Vimu1g03045 626 SUPERFAMILY DNA-binding pseudobarrel domain 20 112 IPR015300 -
Vimu1g03045 626 CDD B3_DNA 303 378 IPR003340 GO:0003677
Vimu1g03045 626 CDD B3_DNA 505 599 IPR003340 GO:0003677
Vimu1g03045 626 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Vimu1g03045 626 SMART B3_2 507 603 IPR003340 GO:0003677
Vimu1g03045 626 SMART B3_2 16 107 IPR003340 GO:0003677
Vimu1g03045 626 SMART B3_2 290 384 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03045 11 105 B3 DNA Binding Superfamily AT3G18990 37.500 8.53e-17 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu1g03045 B3 2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03045 - - gmx:100814386 1006.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g03045 1 42859199 42863616 Vimu1g03045 1 42859199 42863616 ECH