Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03014 ATGAGTAGCATGCCTGCAAAATTGTTGGTCACAATTTTGTACATCTTCTTGGTGTCTCTTCCTGTGCACATGTCACCACATGATGTTAACACAGACACAAAAAATCTCAGAAGAAGTAGTAGCAGTGGCCACAGGAGCAAAGGTACTGGTGGTGGTGGCTCAGCCAAAGGTTGCAACCACAGCAACAACAATCTATTGGACATAAACACCACCCCATGTAAAAGATCTACCACCATTCAAGCAGTTCCAGCTTCACCCCCTCTTGTTTTTGCAGACCAAAGACTTCAAGTAGTGTATCCAGTAATCCAAAAGTTCAAATCTTCCATCAGTTCTGATCCTCTGGGGGTGACCAACACTTGGGTTGGATCAGACATATGCAGCTACAGAGGCTTCTACTGTGACACTCCTCCTGACAACAGTTCTGCCACTGCTTTGGCCTCTGTTGACTTCAATGGTTTTCAACTTGCTGCTTCCACCCTTGATGGCTTCATTGATAGCCTCCCTGATATTGCTCTCTTCCATGCCAATTCCAACAGTTTTGGTGGCACAATCTCACCCCAAATAGCCAAACTCCCTTACCTATATGAGCTTGATGTTAGCAACAATCAGTTATCTGGTCCATTTCCCTCTGCTGTTCTAGGCATGACTGGTTTAACATTCTTGGACTTGAGGTTCAACTTTTTCTCTGGGGCAGTGCCACCACAGATATTCATACAGAACCTCCAAGTCCTTTTCATAAACAACAACATCTTCACTCAAGGGTTGCCAGATAACTTAGCCACCACTCAGATTCTCTTACTCACCTTAGCAAACAACAAGTTCATGGGTCCTATCCCAAGAAGTCTTCCCAAGGCTTTGGCCTCTCTAAGTGAAGTGTTACTACTTAACAACCAGTTAACAGGCTGTTTGCCTTATGAGATTGGTTTTCTTCAAGAGTCCACAGTGTTTGATGCTGGGAACAACCAATTGACAGGCCCTTTGCCTTTATCTTTGAGCTGTCTGCAGAAGGTGGAGGTGCTCAATTTGGGTGGTAATCTTTTGTATGGCATGGTGCCAGAAGTGGTGTGTGCAGGGTTGGTGAATTTGGTCAACTTTTCATTATCAAATAACTATTTCACACATGTGGGGCCATTCTGTAGGATGCTGATTCAGAGAGGGGTTCTTGATGTTAGCAACAATTGTATTCCTGATCTTCCCTTTCAGAGATCAGTGTTTGAGTGTGCTGAGTTCTTTGCAACCCCAAGGATGTGTCCCTTCATCTGGTTTTATAGCCTCATCCCTTGTAAGCTTCCTTTTCAAAATCCCATTCCTTAG 1314 0.4422 MSSMPAKLLVTILYIFLVSLPVHMSPHDVNTDTKNLRRSSSSGHRSKGTGGGGSAKGCNHSNNNLLDINTTPCKRSTTIQAVPASPPLVFADQRLQVVYPVIQKFKSSISSDPLGVTNTWVGSDICSYRGFYCDTPPDNSSATALASVDFNGFQLAASTLDGFIDSLPDIALFHANSNSFGGTISPQIAKLPYLYELDVSNNQLSGPFPSAVLGMTGLTFLDLRFNFFSGAVPPQIFIQNLQVLFINNNIFTQGLPDNLATTQILLLTLANNKFMGPIPRSLPKALASLSEVLLLNNQLTGCLPYEIGFLQESTVFDAGNNQLTGPLPLSLSCLQKVEVLNLGGNLLYGMVPEVVCAGLVNLVNFSLSNNYFTHVGPFCRMLIQRGVLDVSNNCIPDLPFQRSVFECAEFFATPRMCPFIWFYSLIPCKLPFQNPIP 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03014 437 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 60 428 - -
Vimu1g03014 437 MobiDBLite consensus disorder prediction 29 58 - -
Vimu1g03014 437 SUPERFAMILY L domain-like 102 395 - -
Vimu1g03014 437 Gene3D Ribonuclease Inhibitor 101 264 IPR032675 -
Vimu1g03014 437 Gene3D Ribonuclease Inhibitor 265 408 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03014 Vimu-Chr1 42536799 42539568 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03014 80 414 Leucine-rich Repeat extension Gene Families AT3G24480 41.791 5.39e-83 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03014 - - pvu:PHAVU_001G024400g 744.962