Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03009 ATGAACGAACAGAACAAGAGCGACAAATTACGATGTCACGGGTTGTTGTGTGTGGCTGAGGGGTATGGAGACGAAAGAAAAACAAATTGGATAAGTGAGGAAGGTGGATTAAGTAGGGATGACAGAGAAAATGTTGGAGTGAGAGAGACGAAAGAGAAAGGGTTGAGAGGAATGAGGGAGGATGGAGTACATTTAGGAAGGATGGGGTGCATGAAGGAACATGAGGCAGCCCACAAAGAACCAAACAAAAAATATCTGTGTTCTGAAAGAAGAAGAGCGAAGATGAAGAGAAAGAAGGAAAAGAGGCACGTTGCTTCCAACAAGCACTTATCTCAGCGTTACCCACGCATCCAATGCTGCTGCATCGAAATCGACATGGTGAAGAACTCCCAAGGAATTTACGCCCCCAAAAGCGACAAGGTCGTTGTTCTCTGGGACCTCGACAACAAGCCCCCTCGTGGGCCTCCATACAACGCCGCCGTTTCGCTCAAAACCCTCGCCTCCCGCTTCGGCGAGGTGACTGACTTCTCCGCCTACGCCAACCGCCACGCCTTCGTCCACCTCCCCCAGTGGGTCCTACACGAGCGCCGGGAACGCAGGAACCTCGACATCCTCGAACGGAAGGGTGTGGTCACACCCTCGGAGCCCTACACGTGTGGGGTGTGTGGGCGAAAGTGCAAGACCCACATGGACCTGAAGAAGCACTTCAAGCAGCTGCACCAGCGCGAGCGTGAGAAGAAGCTGAACCGGTTGAAGTCGCTGAAGGGGAAAAAGAAACGGGACCGTTTCAAGGAACGGTTTTTGCGCGGGAATCATAAGTATAATGAGGCGGCGAGGACGCTGCTGGTTCCGAAGGTGGGGTACGGGCTGGCGGCGGAGCTGCGGCGGGCGGGGGTGTTTGTTAAGACGGTGGAGGATAAACCGCAGGCGGCGGATTGGGCCCTGAAGAGGCAGATGGTTCATTCGATGAGTAGAGGGATTGATTGGCTGTTTTTGGTTTCGGATGATTCGGATTTTTCGGAGATGTTGAGGAGGGCGAGGGAGGCGGATTTGGGGACTGTGGTGGTTGGTGATTGGGATAGGGCTTTGGGGAGGCATGCGGATTTGTGGGTGCCATGGAGTGGGGTTGAGAATGGGGAAGTGGAGTTAGTGCCCGAGATGAAGAAGAGAAGAGAACATGGTTTTCAGAATGACGACGACGACGACGATGATCACCATGATCGTGGTGATTGGGGAGGTTTGAATGAGGACGAGGAATTGGGGCAAGAGTTTATGTTGCTGCGTAGTGAGGATGAGGATGAAGATGCGGGAAACTATTATTACGATGATGATGAAGAAGAAGAGGAAGAAGAAGATGGATTGTATATATTTTGA 1374 0.5226 MNEQNKSDKLRCHGLLCVAEGYGDERKTNWISEEGGLSRDDRENVGVRETKEKGLRGMREDGVHLGRMGCMKEHEAAHKEPNKKYLCSERRRAKMKRKKEKRHVASNKHLSQRYPRIQCCCIEIDMVKNSQGIYAPKSDKVVVLWDLDNKPPRGPPYNAAVSLKTLASRFGEVTDFSAYANRHAFVHLPQWVLHERRERRNLDILERKGVVTPSEPYTCGVCGRKCKTHMDLKKHFKQLHQREREKKLNRLKSLKGKKKRDRFKERFLRGNHKYNEAARTLLVPKVGYGLAAELRRAGVFVKTVEDKPQAADWALKRQMVHSMSRGIDWLFLVSDDSDFSEMLRRAREADLGTVVVGDWDRALGRHADLWVPWSGVENGEVELVPEMKKRREHGFQNDDDDDDDHHDRGDWGGLNEDEELGQEFMLLRSEDEDEDAGNYYYDDDEEEEEEEDGLYIF 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03009 457 CDD PIN_LabA-like 227 358 - -
Vimu1g03009 457 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 109 448 - -
Vimu1g03009 457 MobiDBLite consensus disorder prediction 393 457 - -
Vimu1g03009 457 MobiDBLite consensus disorder prediction 393 434 - -
Vimu1g03009 457 ProSitePatterns Zinc finger C2H2 type domain signature. 219 240 IPR013087 -
Vimu1g03009 457 Gene3D - 134 374 - -
Vimu1g03009 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 217 245 IPR013087 -
Vimu1g03009 457 Coils Coil 237 257 - -
Vimu1g03009 457 MobiDBLite consensus disorder prediction 435 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03009 Vimu-Chr1 42479633 42485803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03009 116 439 C2H2 Transcription Factor Family AT5G52010 64.985 1.02e-151 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu1g03009 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03009 - - qsa:O6P43_016041 466.463